RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 TCP1P17987 556 aaKnown RBP14.49□□□□□ -0.09
LDLR-213ENST00000560502 NOMO3P69849 1222 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 CAMK2GQ13555 558 aaPredicted RBP14.49□□□□□ -0.09
LDLR-213ENST00000560502 C11orf63Q6NUN7 778 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 CCNI2Q6ZMN8 369 aaPredicted RBP14.49□□□□□ -0.09
LDLR-213ENST00000560502 DBX2Q6ZNG2 339 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 RSRC2Q7L4I2 434 aaKnown RBP14.49□□□□□ -0.09
LDLR-213ENST00000560502 SLCO6A1Q86UG4 719 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 PNPLA1Q8N8W4 532 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 OR2T3Q8NH03 318 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 ULBP1Q9BZM6 244 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 CIPCQ9C0C6 399 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 THAP2Q9H0W7 228 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 MIR1-1HGQ9H1L0 117 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 CDC23Q9UJX2 597 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 STOML2Q9UJZ1 356 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 TFR2Q9UP52 801 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 APOBEC2Q9Y235 224 aaKnown RBP14.49□□□□□ -0.09
LDLR-213ENST00000560502 FNDC3AQ9Y2H6 1198 aaKnown RBP14.49□□□□□ -0.09
LDLR-213ENST00000560502 SLCO1B1Q9Y6L6 691 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 IGSF10Q6WRI0 2623 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 NBEAQ8NFP9 2946 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 TULP2O00295 520 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 CES2O00748 559 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 RIOK3O14730 519 aaKnown RBP14.48□□□□□ -0.09
LDLR-213ENST00000560502 TIMM44O43615 452 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 SLU7O95391 586 aaKnown RBP14.48□□□□□ -0.09
LDLR-213ENST00000560502 ZBED1O96006 694 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 CALB1P05937 261 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 EPHX1P07099 455 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 HLA-FP30511 346 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 MATKP42679 507 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 NOP2P46087 812 aaKnown RBP14.48□□□□□ -0.09
LDLR-213ENST00000560502 TKTL1P51854 596 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 PDE4CQ08493 712 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 IL27RAQ6UWB1 636 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 SERPINA13PQ6UXR4 307 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 MON1BQ7L1V2 547 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 KIAA0907Q7Z7F0 614 aaPredicted RBP14.48□□□□□ -0.09
LDLR-213ENST00000560502 SLFN11Q7Z7L1 901 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 CACUL1Q86Y37 369 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.48□□□□□ -0.09
LDLR-213ENST00000560502 LRRC57Q8N9N7 239 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 TPCN2Q8NHX9 752 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 DDI1Q8WTU0 396 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 MIS12Q9H081 205 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 TMEM245Q9H330 911 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 GAREM1Q9H706 876 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 TM7SF3Q9NS93 570 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 TOR4AQ9NXH8 423 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 TAS2R14Q9NYV8 317 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 KIAA1522Q9P206 1035 aaPredicted RBP14.48□□□□□ -0.09
LDLR-213ENST00000560502 RNF14Q9UBS8 474 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 EIF2B4Q9UI10 523 aaKnown RBP14.48□□□□□ -0.09
LDLR-213ENST00000560502 SALL4Q9UJQ4 1053 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 SNX12Q9UMY4 172 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 GPSM3Q9Y4H4 160 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 HYOU1Q9Y4L1 999 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 PCDHGB2Q9Y5G2 931 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 SAR1BQ9Y6B6 198 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 SCINQ9Y6U3 715 aa14.48□□□□□ -0.09
LDLR-213ENST00000560502 NYNRINQ9P2P1 1898 aaKnown RBP14.48□□□□□ -0.09
LDLR-213ENST00000560502 GOLGA4Q13439 2230 aaKnown RBP14.47□□□□□ -0.09
LDLR-213ENST00000560502 PLXNA2O75051 1894 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 GRID2IPA4D2P6 1211 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 TMCO5BA8MYB1 307 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 XPO1O14980 1071 aaKnown RBP14.47□□□□□ -0.09
LDLR-213ENST00000560502 BUB1O43683 1085 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 PALMO75781 387 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 HLA-EP13747 358 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 ABCB4P21439 1286 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 GSCP56915 257 aaPredicted RBP14.47□□□□□ -0.09
LDLR-213ENST00000560502 CKAP4Q07065 602 aaKnown RBP14.47□□□□□ -0.09
LDLR-213ENST00000560502 CNGA2Q16280 664 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 GOLGA7BQ2TAP0 167 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 HLA-BQ31612 363 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 MPPE1Q53F39 396 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 SGO2Q562F6 1265 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 NAA35Q5VZE5 725 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 MCOLN2Q8IZK6 566 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 CEP112Q8N8E3 955 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 SLC35G2Q8TBE7 412 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 WFIKKN2Q8TEU8 576 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 NDRG1Q92597 394 aaKnown RBP14.47□□□□□ -0.09
LDLR-213ENST00000560502 ZNF653Q96CK0 615 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 MRPL47Q9HD33 250 aaKnown RBP14.47□□□□□ -0.09
LDLR-213ENST00000560502 OSGEPQ9NPF4 335 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 ACP6Q9NPH0 428 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 OLA1Q9NTK5 396 aaKnown RBP14.47□□□□□ -0.09
LDLR-213ENST00000560502 TSPAN16Q9UKR8 245 aa14.47□□□□□ -0.09
LDLR-213ENST00000560502 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.47□□□□□ -0.09
LDLR-213ENST00000560502 HBS1LQ9Y450 684 aaKnown RBP14.47□□□□□ -0.09
LDLR-213ENST00000560502 A0A1B0GVT2 93 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 FLRT2O43155 660 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 LATS1O95835 1130 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 SETSIPP0DME0 302 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 ACADMP11310 421 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 CD19P15391 556 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 MMP8P22894 467 aa14.46□□□□□ -0.09
LDLR-213ENST00000560502 BRD2P25440 801 aaKnown RBP14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms