RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 ARHGEF19Q8IW93 802 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 CCAR2Q8N163 923 aaKnown RBP9.45□□□□□ -0.9
HDDC3-204ENST00000559834 CACTIN-AS1Q8N1I8 211 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 NELFBQ8WX92 580 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 BAP1Q92560 729 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 TSC1Q92574 1164 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 UBL7Q96S82 380 aaPredicted RBP9.45□□□□□ -0.9
HDDC3-204ENST00000559834 UBE2TQ9NPD8 197 aaPredicted RBP9.45□□□□□ -0.9
HDDC3-204ENST00000559834 SLC25A13Q9UJS0 675 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 ZFHX4Q86UP3 3567 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 AKAP13Q12802 2813 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 E5RJQ4 531 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 PRAMEF26H0Y7S4 382 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 WNT9AO14904 365 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 MCF2LO15068 1137 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 ALOX15BO15296 676 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 PLRG1O43660 514 aaKnown RBP9.44□□□□□ -0.9
HDDC3-204ENST00000559834 ATP9BO43861 1147 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 RNGTTO60942 597 aaKnown RBP9.44□□□□□ -0.9
HDDC3-204ENST00000559834 IGLV3-25P01717 112 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 CD44P16070 742 aaKnown RBP9.44□□□□□ -0.9
HDDC3-204ENST00000559834 GNA15P30679 374 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 DRD3P35462 400 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 ACADVLP49748 655 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 STK19P49842 368 aaPredicted RBP9.44□□□□□ -0.9
HDDC3-204ENST00000559834 SEMG2Q02383 582 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 EIF4EBP2Q13542 120 aaPredicted RBP9.44□□□□□ -0.9
HDDC3-204ENST00000559834 RTP5Q14D33 572 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 SETMARQ53H47 684 aaPredicted RBP9.44□□□□□ -0.9
HDDC3-204ENST00000559834 HES3Q5TGS1 186 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 FBXL22Q6P050 247 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 TRIM69Q86WT6 500 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 TRIM59Q8IWR1 403 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 FRS2Q8WU20 508 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 KLHDC7BQ96G42 594 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 KREMEN1Q96MU8 473 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 RPRD1AQ96P16 312 aaPredicted RBP9.44□□□□□ -0.9
HDDC3-204ENST00000559834 NOX5Q96PH1 765 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 PRMT1Q99873 361 aaKnown RBP9.44□□□□□ -0.9
HDDC3-204ENST00000559834 FEM1AQ9BSK4 669 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 INTS2Q9H0H0 1204 aaKnown RBP9.44□□□□□ -0.9
HDDC3-204ENST00000559834 FAM204AQ9H8W3 233 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 TMEM51Q9NW97 253 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 ASNSD1Q9NWL6 643 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 DDIT4Q9NX09 232 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 ARHGAP20Q9P2F6 1191 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 CYTH4Q9UIA0 394 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 MAN1B1Q9UKM7 699 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 PPM1HQ9ULR3 514 aa9.44□□□□□ -0.9
HDDC3-204ENST00000559834 ANKRD11Q6UB99 2663 aaPredicted RBP9.44□□□□□ -0.9
HDDC3-204ENST00000559834 TMEM131Q92545 1883 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 MUC22E2RYF6 1773 aaPredicted RBP9.43□□□□□ -0.9
HDDC3-204ENST00000559834 SYNJ2BP-COX16A0A087WUM0 186 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 PPP1R3GB7ZBB8 358 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 TK2O00142 265 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 CBX4O00257 560 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 HSF2BPO75031 334 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 RTN2O75298 545 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 CLDN11O75508 207 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 GLDCP23378 1020 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 MAT2AP31153 395 aaKnown RBP9.43□□□□□ -0.9
HDDC3-204ENST00000559834 USP8P40818 1118 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 EIF2S3P41091 472 aaKnown RBP9.43□□□□□ -0.9
HDDC3-204ENST00000559834 MARSP56192 900 aaKnown RBP9.43□□□□□ -0.9
HDDC3-204ENST00000559834 PPP2CBP62714 309 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 PPP2CAP67775 309 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 KRT83P78385 493 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 C19orf57Q0VDD7 668 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 ZNF211Q13398 564 aaPredicted RBP9.43□□□□□ -0.9
HDDC3-204ENST00000559834 AUHQ13825 339 aaKnown RBP9.43□□□□□ -0.9
HDDC3-204ENST00000559834 DLG2Q15700 870 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 SFMBT2Q5VUG0 894 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 SMYD5Q6GMV2 418 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 NEK5Q6P3R8 708 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 FBXL19Q6PCT2 694 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 SPATS2Q86XZ4 545 aaKnown RBP9.43□□□□□ -0.9
HDDC3-204ENST00000559834 DEFB106AQ8N104 65 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 PIP4K2CQ8TBX8 421 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 FGF11Q92914 225 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 FAM131CQ96AQ9 280 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 CCDC114Q96M63 670 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 SRRTQ9BXP5 876 aaKnown RBP9.43□□□□□ -0.9
HDDC3-204ENST00000559834 PREBQ9HCU5 417 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 COX16Q9P0S2 106 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 VPS28Q9UK41 221 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 CLCA2Q9UQC9 943 aa9.43□□□□□ -0.9
HDDC3-204ENST00000559834 BNIP3LO60238 219 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 VAV1P15498 845 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 ACP1P24666 158 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 ACTN2P35609 894 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 CDH4P55283 916 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 DAB2P98082 770 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 PTK2Q05397 1052 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 CNTN1Q12860 1018 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 PAK1Q13153 545 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 NME3Q13232 169 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 PDCLQ13371 301 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 TAF5Q15542 800 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 ACBD5Q5T8D3 534 aaPredicted RBP9.42□□□□□ -0.9
HDDC3-204ENST00000559834 CXorf57Q6NSI4 855 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 139 ms