RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ITPAQ9BY32 194 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 FRMD8Q9BZ67 464 aaPredicted RBP1.8□□□□□ -2.12
USP3-209ENST00000558925 INTS2Q9H0H0 1204 aaKnown RBP1.8□□□□□ -2.12
USP3-209ENST00000558925 TAOK3Q9H2K8 898 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 MLXIPLQ9NP71 852 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 SNX15Q9NRS6 342 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 SLC22A11Q9NSA0 550 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 RXFP3Q9NSD7 469 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 CLIC5Q9NZA1 410 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 FOXJ2Q9P0K8 574 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 UPB1Q9UBR1 384 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 TBC1D29Q9UFV1 150 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 CNOT7Q9UIV1 285 aaKnown RBP1.8□□□□□ -2.12
USP3-209ENST00000558925 ADAM21Q9UKJ8 722 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 SARDHQ9UL12 918 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 FZD4Q9ULV1 537 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 RABGAP1Q9Y3P9 1069 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 EPN1Q9Y6I3 576 aaPredicted RBP1.8□□□□□ -2.12
USP3-209ENST00000558925 MAST3O60307 1309 aa1.8□□□□□ -2.12
USP3-209ENST00000558925 A0A0A0MQY5 61 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 CCDC196A0A1B0GTZ2 297 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 TCRBV7S3A2A0A539 114 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 TCRBV5S1A1TA0A578 114 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 PI4KAP2A4QPH2 592 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 CGB1A6NKQ9 187 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 C3orf70A6NLC5 250 aaPredicted RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 SNAP23O00161 211 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 DSCR3O14972 297 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 TNFSF14O43557 240 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 PTP4A3O75365 173 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 RBMXL2O75526 392 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 DDX58O95786 925 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 MT-CO3P00414 261 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 DLDP09622 509 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 MYCLP12524 364 aaPredicted RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 DUSP1P28562 367 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 IDUAP35475 653 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 MTNR1AP48039 350 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 ZNF84P51523 738 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 DRG2P55039 364 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 CDH15P55291 814 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 CFHR3Q02985 330 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 DMWDQ09019 674 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 PTP4A2Q12974 167 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 MPP3Q13368 585 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 DCTN2Q13561 401 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 ALKBH1Q13686 389 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 IL13RA2Q14627 380 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 SEC23BQ15437 767 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 CNGA3Q16281 694 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 SLC9B1Q4ZJI4 515 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 ZNF766Q5HY98 468 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 PLAC9Q5JTB6 97 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 AARS2Q5JTZ9 985 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 TSTD2Q5T7W7 516 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 TMEM65Q6PI78 240 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 SLC30A9Q6PML9 568 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 ATF7IPQ6VMQ6 1270 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 DCDC5Q6ZRR9 648 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 WDR53Q7Z5U6 358 aaPredicted RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 PXKQ7Z7A4 578 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 CPLX4Q7Z7G2 160 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 AMIGO2Q86SJ2 522 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 TMEM200AQ86VY9 491 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 RFX6Q8HWS3 928 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 RHPN2Q8IUC4 686 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 ARMC8Q8IUR7 673 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 SFTPA1Q8IWL2 248 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 BRSK2Q8IWQ3 736 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 DIS3L2Q8IYB7 885 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 LAS2Q8IYD9 372 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 TMEM217Q8N7C4 229 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 CCDC89Q8N998 374 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 BOLLQ8N9W6 283 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 TERB1Q8NA31 727 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 SETD9Q8NE22 299 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 NGDNQ8NEJ9 315 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 RFWD2Q8NHY2 731 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 NFKBIDQ8NI38 313 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 FAM110DQ8TAY7 271 aaPredicted RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 CREB3L4Q8TEY5 395 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 LINC00476Q8WZB0 136 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 SMG7Q92540 1137 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 CELF1Q92879 486 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 ATP2A3Q93084 1043 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 CAVIN3Q969G5 261 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 REPS1Q96D71 796 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 PDLIM2Q96JY6 352 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 ADAD1Q96M93 576 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 KLHL15Q96M94 604 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 FYTTD1Q96QD9 318 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 NR1H4Q96RI1 486 aaPredicted RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 ZNF347Q96SE7 839 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 NPAS1Q99742 590 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 PIP5K1AQ99755 562 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 SDF4Q9BRK5 362 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 ABHD14AQ9BUJ0 271 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 GATA5Q9BWX5 397 aaPredicted RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 C1QTNF7Q9BXJ2 289 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 ADGRE3Q9BY15 652 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms