RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.85□□□□□ -0.67
CUX1-217ENST00000558836 SF3B1O75533 1304 aaKnown RBP eCLIP10.85□□□□□ -0.676e-6■■■■■ 65.2
CUX1-217ENST00000558836 ZCWPW2A0A1B0GU75 182 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 CFAP73A6NFT4 308 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 PMPCBO75439 489 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 GSRP00390 522 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 GSTA2P09210 222 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 CCR1P32246 355 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 CRHR1P34998 444 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 SERPINB6P35237 376 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 CCNFP41002 786 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 HCAR3P49019 387 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 IRF9Q00978 393 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 CCDC15Q0P6D6 951 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 ANKRD20A4Q4UJ75 823 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 NOMO2Q5JPE7 1267 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 KCTD11Q693B1 232 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 MARK2Q7KZI7 788 aaKnown RBP10.84□□□□□ -0.67
CUX1-217ENST00000558836 ARHGAP12Q8IWW6 846 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 PLD6Q8N2A8 252 aaKnown RBP10.84□□□□□ -0.67
CUX1-217ENST00000558836 RAET1EQ8TD07 263 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 RGS18Q9NS28 235 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 IARS2Q9NSE4 1012 aaKnown RBP10.84□□□□□ -0.67
CUX1-217ENST00000558836 ABCC13Q9NSE7 274 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 MTO1Q9Y2Z2 717 aaKnown RBP10.84□□□□□ -0.67
CUX1-217ENST00000558836 HS3ST4Q9Y661 456 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 NCAM2O15394 837 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 BPGMP07738 259 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 SERPINB9P50453 376 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 AQP5P55064 265 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 EFEMP1Q12805 493 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 CBLBQ13191 982 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 PCSK7Q16549 785 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 FAM171A1Q5VUB5 890 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 FSTL4Q6MZW2 842 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 TRAF7Q6Q0C0 670 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 COLGALT2Q8IYK4 626 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 DCLK2Q8N568 766 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 ATPAF2Q8N5M1 289 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.84□□□□□ -0.67
CUX1-217ENST00000558836 IRGQQ8WZA9 623 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 FAM193BQ96PV7 902 aaPredicted RBP10.84□□□□□ -0.67
CUX1-217ENST00000558836 EBF4Q9BQW3 602 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 GPR62Q9BZJ7 368 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 NMUR2Q9GZQ4 415 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 LRRC40Q9H9A6 602 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 TXLNGQ9NUQ3 528 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 RRN3Q9NYV6 651 aa10.84□□□□□ -0.67
CUX1-217ENST00000558836 CHRNA4P43681 627 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 MAXP61244 160 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 CTC1Q2NKJ3 1217 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 VARS2Q5ST30 1063 aaKnown RBP10.83□□□□□ -0.68
CUX1-217ENST00000558836 C4orf50Q6ZRC1 276 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 ZNF354CQ86Y25 554 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 AGAP11Q8TF27 550 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 TBC1D10AQ9BXI6 508 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 CASS4Q9NQ75 786 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 STARD7Q9NQZ5 370 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 GMIPQ9P107 970 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 SIRPGQ9P1W8 387 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 DNAJC6O75061 913 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 IGLV3-25P01717 112 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 MAPRE1Q15691 268 aaKnown RBP10.83□□□□□ -0.68
CUX1-217ENST00000558836 ICE2Q659A1 982 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 TMEM135Q86UB9 458 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 LONP2Q86WA8 852 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 CIR1Q86X95 450 aaPredicted RBP10.83□□□□□ -0.68
CUX1-217ENST00000558836 C10orf107Q8IVU9 208 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 AGR3Q8TD06 166 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 SNX15Q9NRS6 342 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 ARHGEF38Q9NXL2 777 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 CPSF2Q9P2I0 782 aaKnown RBP10.83□□□□□ -0.68
CUX1-217ENST00000558836 SRRDQ9UH36 339 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 A0A1W2PQ45 241 aaPredicted RBP10.83□□□□□ -0.68
CUX1-217ENST00000558836 A0A1W2PQY0 241 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 E9PAM4 449 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 MAFKO60675 156 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 CNTN5O94779 1100 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 PRKCGP05129 697 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 AVPR1AP37288 418 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 GP5P40197 560 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 ERFP50548 548 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 STX3Q13277 289 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 EIF4EBP2Q13542 120 aaPredicted RBP10.83□□□□□ -0.68
CUX1-217ENST00000558836 PSMD5Q16401 504 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 TEDDM1Q5T9Z0 273 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 RSPO2Q6UXX9 243 aaPredicted RBP10.83□□□□□ -0.68
CUX1-217ENST00000558836 KCNMB4Q86W47 210 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 TMEM173Q86WV6 379 aaPredicted RBP10.83□□□□□ -0.68
CUX1-217ENST00000558836 SUGP1Q8IWZ8 645 aaKnown RBP10.83□□□□□ -0.68
CUX1-217ENST00000558836 SPATA6LQ8N4H0 392 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 DBF4BQ8NFT6 615 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 DPF3Q92784 378 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 KLHL5Q96PQ7 755 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 FTHL17Q9BXU8 183 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 CRISPLD1Q9H336 500 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 RBM22Q9NW64 420 aaKnown RBP eCLIP10.83□□□□□ -0.68
CUX1-217ENST00000558836 PCDHB8Q9UN66 801 aa10.83□□□□□ -0.68
CUX1-217ENST00000558836 NLRC5Q86WI3 1866 aa10.82□□□□□ -0.68
CUX1-217ENST00000558836 PTPRDP23468 1912 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms