RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 BTNL10A8MVZ5 291 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 RBAK-RBAKDNI3L0D1 243 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 KCNK3O14649 394 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 NCK2O43639 380 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 BUB1BO60566 1050 aaPredicted RBP5.37□□□□□ -1.55
LDLR-209ENST00000558528 GFRA3O60609 400 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 ASS1P00966 412 aaKnown RBP5.37□□□□□ -1.55
LDLR-209ENST00000558528 FTLP02792 175 aaPredicted RBP5.37□□□□□ -1.55
LDLR-209ENST00000558528 PFKMP08237 780 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 PAEPP09466 180 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 CLEC2LP0C7M8 214 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 CXCL8P10145 99 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 COL6A2P12110 1019 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 ACTN1P12814 892 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 KRT5P13647 590 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 TSHRP16473 764 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 LRPAP1P30533 357 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 ELF1P32519 619 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 USP8P40818 1118 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 TNFSF9P41273 254 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 KLK7P49862 253 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 VAV2P52735 878 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 CLNS1AP54105 237 aaKnown RBP5.37□□□□□ -1.55
LDLR-209ENST00000558528 NAP1L1P55209 391 aaKnown RBP5.37□□□□□ -1.55
LDLR-209ENST00000558528 CORO7P57737 925 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 RAB1AP62820 205 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 TUBB4BP68371 445 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 NOP14P78316 857 aaKnown RBP5.37□□□□□ -1.55
LDLR-209ENST00000558528 FAM189BP81408 668 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 MPP1Q00013 466 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 TFF2Q03403 129 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 CDK5R2Q13319 367 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 ADGRE1Q14246 886 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 NAB2Q15742 525 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 ZBTB6Q15916 424 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 AAK1Q2M2I8 961 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 TRIM71Q2Q1W2 868 aaKnown RBP5.37□□□□□ -1.55
LDLR-209ENST00000558528 ZNF699Q32M78 642 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 EMC4Q5J8M3 183 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 CATSPEREQ5SY80 951 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 ZNF618Q5T7W0 954 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 JADE1Q6IE81 842 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 FSTL4Q6MZW2 842 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 KIAA1841Q6NSI8 718 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 CDPF1Q6NVV7 123 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 WDR59Q6PJI9 974 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 PAOXQ6QHF9 649 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 FAM180AQ6UWF9 173 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 Q6ZS46 218 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 LRRC8DQ7L1W4 858 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 IRF2BP2Q7Z5L9 587 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 UNC93AQ86WB7 457 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 TMEM139Q8IV31 216 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 FAM126BQ8IXS8 530 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 CACNA2D3Q8IZS8 1091 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 OXR1Q8N573 874 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 KIF18AQ8NI77 898 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 SLC30A5Q8TAD4 765 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 PIP4K2CQ8TBX8 421 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 PHOSPHO1Q8TCT1 267 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 URGCPQ8TCY9 931 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 PLEKHO2Q8TD55 490 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 TAS1R2Q8TE23 839 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 HPDLQ96IR7 371 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 MSLNLQ96KJ4 702 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 FCRL2Q96LA5 508 aaPredicted RBP5.37□□□□□ -1.55
LDLR-209ENST00000558528 ALS2CR12Q96Q35 445 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 CHP1Q99653 195 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 AGPAT1Q99943 283 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 IFIH1Q9BYX4 1025 aaKnown RBP5.37□□□□□ -1.55
LDLR-209ENST00000558528 IKZF4Q9H2S9 585 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 SIX2Q9NPC8 291 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 DPP7Q9UHL4 492 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 PADI3Q9ULW8 664 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 AGAP1Q9UPQ3 857 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 CNTN6Q9UQ52 1028 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 CRYL1Q9Y2S2 319 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 ASB1Q9Y576 335 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 PCDHB4Q9Y5E5 795 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 PCDHA13Q9Y5I0 950 aa5.37□□□□□ -1.55
LDLR-209ENST00000558528 CACNA1HO95180 2353 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 RIF1Q5UIP0 2472 aaKnown RBP5.36□□□□□ -1.55
LDLR-209ENST00000558528 DMXL1Q9Y485 3027 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 A0A0A6YYK5 440 aaPredicted RBP5.36□□□□□ -1.55
LDLR-209ENST00000558528 SMIM28A0A1B0GU29 152 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 PRSS38A1L453 326 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 FAM171A2A8MVW0 826 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 EPHB6O15197 1021 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 PJA2O43164 708 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 TRAPPC3O43617 180 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 SGTAO43765 313 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 HUS1O60921 280 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 TACC1O75410 805 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 CSDE1O75534 798 aaKnown RBP5.36□□□□□ -1.55
LDLR-209ENST00000558528 RECQL4O94761 1208 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 ITGB3P05106 788 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 EDN1P05305 212 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 H2AFZP0C0S5 128 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 TMEM253P0C7T8 217 aa5.36□□□□□ -1.55
LDLR-209ENST00000558528 MYBL1P10243 752 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms