RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 DIMT1Q9UNQ2 313 aaKnown RBP14.07□□□□□ -0.16
SHMT2-226ENST00000556825 AFDNP55196 1824 aaKnown RBP14.07□□□□□ -0.16
SHMT2-226ENST00000556825 ANKRD36CQ5JPF3 1778 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 TRPC5OSA6NMA1 111 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 EXTL3O43909 919 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 CD4P01730 458 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 CALML3P27482 149 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 ADSSP30520 456 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 NR2C2P49116 596 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 ST13P50502 369 aaKnown RBP14.07□□□□□ -0.16
SHMT2-226ENST00000556825 S100A12P80511 92 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 ILF2Q12905 390 aaKnown RBP14.07□□□□□ -0.16
SHMT2-226ENST00000556825 SLC13A2Q13183 592 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 SCARF1Q14162 830 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 NEDD8Q15843 81 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 BRMS1LQ5PSV4 323 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 AGAP6Q5VW22 663 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 GTF2IRD2BQ6EKJ0 949 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 ZNF704Q6ZNC4 412 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-226ENST00000556825 GTF2IRD2Q86UP8 949 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 IFNL3Q8IZI9 196 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 BLIDQ8IZY5 108 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 SLAIN1Q8ND83 568 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 ZSWIM2Q8NEG5 633 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 CMASQ8NFW8 434 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-226ENST00000556825 ZFPM2Q8WW38 1151 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 AGAP4Q96P64 663 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 OPALINQ96PE5 141 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 PAFAH2Q99487 392 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 PDGFDQ9GZP0 370 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-226ENST00000556825 FBXO8Q9NRD0 319 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.07□□□□□ -0.16
SHMT2-226ENST00000556825 PCM1Q15154 2024 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 NFASCO94856 1347 aa14.07□□□□□ -0.16
SHMT2-226ENST00000556825 ARFGEF2Q9Y6D5 1785 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 NCAM2O15394 837 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 SULT1B1O43704 296 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 ZBTB7AO95365 584 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 XRCC1P18887 633 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-226ENST00000556825 BFSP2Q13515 415 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 SEC23AQ15436 765 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 SLC9A4Q6AI14 798 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 PIWIL3Q7Z3Z3 882 aaKnown RBP14.06□□□□□ -0.16
SHMT2-226ENST00000556825 TP53I13Q8NBR0 393 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-226ENST00000556825 PJA1Q8NG27 643 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 DCAKDQ8WVC6 231 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 SLC44A1Q8WWI5 657 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 SAMD11Q96NU1 681 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 ASB2Q96Q27 587 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 STRBPQ96SI9 672 aaKnown RBP14.06□□□□□ -0.16
SHMT2-226ENST00000556825 GDF15Q99988 308 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 ZNF395Q9H8N7 513 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-226ENST00000556825 BLOC1S4Q9NUP1 217 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 COPG2Q9UBF2 871 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 XPO7Q9UIA9 1087 aaKnown RBP14.06□□□□□ -0.16
SHMT2-226ENST00000556825 VWA7Q9Y334 891 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 PCDHGA10Q9Y5H3 936 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 LOC100653049A0A140TA62 436 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 ATG13O75143 517 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 SNNO75324 88 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-226ENST00000556825 BCAS2O75934 225 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-226ENST00000556825 KRT34O76011 436 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 SEMA3DO95025 777 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 DLGAP3O95886 979 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 BMP4P12644 408 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 COX4I1P13073 169 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 CES4AQ5XG92 561 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 ZNF438Q7Z4V0 828 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 NUDCD3Q8IVD9 361 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 ETNPPLQ8TBG4 499 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 KCTD4Q8WVF5 259 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 SNX19Q92543 992 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 MUC3BQ9H195 1237 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 PLSCR3Q9NRY6 295 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 ACOXLQ9NUZ1 547 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 PAQR5Q9NXK6 330 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-226ENST00000556825 PACSIN3Q9UKS6 424 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 PCDHA6Q9UN73 950 aa14.06□□□□□ -0.16
SHMT2-226ENST00000556825 COL14A1Q05707 1796 aaKnown RBP14.05□□□□□ -0.16
SHMT2-226ENST00000556825 C2orf81A6NN90 581 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 F5H6K3 240 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 PHGDHO43175 533 aaKnown RBP14.05□□□□□ -0.16
SHMT2-226ENST00000556825 NOS1APO75052 506 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-226ENST00000556825 SCO1O75880 301 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 MYL4P12829 197 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 CYP3A5P20815 502 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 ALAS2P22557 587 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 KLRC2P26717 231 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 GPX6P59796 221 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 GPC5P78333 572 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 PEX6Q13608 980 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 ACAP2Q15057 778 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 TTBK2Q6IQ55 1244 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 ZNF544Q6NX49 715 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 GJB7Q6PEY0 223 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 MAMDC4Q6UXC1 1216 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 DBX2Q6ZNG2 339 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 SH2D5Q6ZV89 423 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 FRMD5Q7Z6J6 570 aa14.05□□□□□ -0.16
SHMT2-226ENST00000556825 TFAP2DQ7Z6R9 452 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms