RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TCF7L2Q9NQB0 619 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 SNX15Q9NRS6 342 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 DUS2Q9NX74 493 aaKnown RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 SELENONQ9NZV5 590 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 ZDHHC2Q9UIJ5 367 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 FAF1Q9UNN5 650 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-214ENST00000552783 CSADQ9Y600 493 aa4.96□□□□□ -1.62
LIMA1-214ENST00000552783 ANKRD12Q6UB98 2062 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 A0A1W2PPW3 197 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 ARHGAP10A1A4S6 786 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 TCAF2A6NFQ2 919 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 C2CD4BA6NLJ0 364 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 H3BNH8 94 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 M0QYV0 167 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 DLGAP1O14490 977 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SOCS2O14508 198 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 GRID2O43424 1007 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 MICAL2O94851 1124 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SEC24DO94855 1032 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 H6PDO95479 791 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SBK3P0C264 359 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 TYK2P29597 1187 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 NUMBP49757 651 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 CLCN3P51790 818 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 TNK2Q07912 1038 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 LY6KQ17RY6 165 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 DUOXA2Q1HG44 320 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 CCDC14Q49A88 953 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF667Q5HYK9 610 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 NIPA1Q7RTP0 329 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 CARM1Q86X55 608 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 DCLK2Q8N568 766 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 FAM47BQ8NA70 645 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 TDRD5Q8NAT2 981 aaKnown RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SLC4A11Q8NBS3 891 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 ADCY4Q8NFM4 1077 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 PDCD6IPQ8WUM4 868 aaKnown RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 ATP2A3Q93084 1043 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 RTP4Q96DX8 246 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 ANKRD36BP1Q96IX9 119 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SLC45A3Q96JT2 553 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 TMEM79Q9BSE2 394 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SOX17Q9H6I2 414 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 TNFRSF12AQ9NP84 129 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SYBUQ9NX95 663 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 PLK2Q9NYY3 685 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 PCDHB12Q9Y5F1 795 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 ARHGEF37A1IGU5 675 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 FAM149AA5PLN7 773 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 KCNU1A8MYU2 1149 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 K7EPI3 171 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 PSMD12O00232 456 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 B4GALT5O43286 388 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 GLRA3O75311 464 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 HSPA4LO95757 839 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 LDHAP00338 332 aaKnown RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 PRKCBP05771 671 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 HOXC6P09630 235 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SETSIPP0DME0 302 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 GPD2P43304 727 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 GLRBP48167 497 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 CLCN2P51788 898 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 KPNA1P52294 538 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 MLLT10P55197 1068 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 RPL26P61254 145 aaKnown RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 PHEXP78562 749 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 ATP1A4Q13733 1029 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 CAPSQ13938 189 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 FAM160B1Q5W0V3 765 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 GK5Q6ZS86 529 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 FAM183BPQ6ZVS7 135 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 LYSMD3Q7Z3D4 306 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 BTLAQ7Z6A9 289 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 PATL1Q86TB9 770 aaKnown RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 FAM83AQ86UY5 434 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 TMEM151AQ8N4L1 468 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 PNPLA1Q8N8W4 532 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 AGBL3Q8NEM8 1001 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 FNIP1Q8TF40 1166 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 CLEC4CQ8WTT0 213 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 KHSRPQ92945 711 aaKnown RBP eCLIP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 FAM149B1Q96BN6 582 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 DCPSQ96C86 337 aaKnown RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 MCRS1Q96EZ8 462 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 FERMT1Q9BQL6 677 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 NEURL2Q9BR09 285 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 ADPGKQ9BRR6 497 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SNRNP25Q9BV90 132 aaKnown RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 GCOM2Q9BZD3 368 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 OSBPL6Q9BZF3 934 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 TRIM8Q9BZR9 551 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 PAIP1Q9H074 479 aaKnown RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 KLC2Q9H0B6 622 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 FAM49AQ9H0Q0 323 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 DHX33Q9H6R0 707 aaKnown RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 C20orf96Q9NUD7 363 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SIX4Q9UIU6 781 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SNX13Q9Y5W8 968 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 CNTNAP1P78357 1384 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 UBR3Q6ZT12 1888 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms