RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 TTC34A8MYJ7 566 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 MSTNO14793 375 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 POLR2DO15514 142 aaKnown RBP10.87□□□□□ -0.67
VPS29-208ENST00000550267 SIGLEC6O43699 453 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 WISP1O95388 367 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 C6P13671 934 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 GOT1P17174 413 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 SLC6A4P31645 630 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 VAMP7P51809 220 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 RAD23BP54727 409 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 UCNP55089 124 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 GABREP78334 506 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 E2F1Q01094 437 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 PPP3CAQ08209 521 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 STK4Q13043 487 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 TMEM259Q4ZIN3 620 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 FAM133BQ5BKY9 247 aaKnown RBP10.87□□□□□ -0.67
VPS29-208ENST00000550267 BSPRYQ5W0U4 402 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 ARHGAP17Q68EM7 881 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 NAPEPLDQ6IQ20 393 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 MMS22LQ6ZRQ5 1243 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 MFN1Q8IWA4 741 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 MFSD2AQ8NA29 543 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 ANKRD52Q8NB46 1076 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 SLC4A11Q8NBS3 891 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 KIAA0895Q8NCT3 520 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 TMEM174Q8WUU8 243 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 KCNE4Q8WWG9 221 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 GTPBP3Q969Y2 492 aaKnown RBP10.87□□□□□ -0.67
VPS29-208ENST00000550267 MYEOVQ96EZ4 313 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 ZNF578Q96N58 590 aaPredicted RBP10.87□□□□□ -0.67
VPS29-208ENST00000550267 FAM129BQ96TA1 746 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 GRIP2Q9C0E4 1043 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 MAGEF1Q9HAY2 307 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 ERVW-1Q9UQF0 538 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 MTMR6Q9Y217 621 aa10.87□□□□□ -0.67
VPS29-208ENST00000550267 TBC1D3DA0A087WVF3 549 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 TBC1D3IA0A087WXS9 549 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 TBC1D3EA0A087X179 549 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 TBC1D3KA0A087X1G2 549 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 TARSL2A2RTX5 802 aaKnown RBP10.86□□□□□ -0.67
VPS29-208ENST00000550267 TBC1D3FA6NER0 549 aaPredicted RBP10.86□□□□□ -0.67
VPS29-208ENST00000550267 YJEFN3A6XGL0 299 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 TBC1D3LB9A6J9 549 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 E7ENQ6 273 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 KLK10O43240 276 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 LATO43561 262 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 SLC28A2O43868 658 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 KLRC4O43908 158 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 CUTAO60888 179 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 PPP6R2O75170 966 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 ASLP04424 464 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 TBC1D3HP0C7X1 549 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 MAT2AP31153 395 aaKnown RBP10.86□□□□□ -0.67
VPS29-208ENST00000550267 DAB2P98082 770 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 ADIGQ0VDE8 80 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 GOLGA7BQ2TAP0 167 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 FSCBQ5H9T9 825 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 MPP7Q5T2T1 576 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 TBC1D3GQ6DHY5 549 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 TBC1D3CQ6IPX1 549 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 TBC1D3Q8IZP1 549 aaPredicted RBP10.86□□□□□ -0.67
VPS29-208ENST00000550267 STK40Q8N2I9 435 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 SLC25A45Q8N413 288 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 FIBINQ8TAL6 211 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 PRICKLE1Q96MT3 831 aaPredicted RBP10.86□□□□□ -0.67
VPS29-208ENST00000550267 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.86□□□□□ -0.67
VPS29-208ENST00000550267 LRRC4Q9HBW1 653 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 CISHQ9NSE2 258 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 ARHGAP20Q9P2F6 1191 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 FRMD4BQ9Y2L6 1034 aa10.86□□□□□ -0.67
VPS29-208ENST00000550267 PTPRQQ9UMZ3 2332 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 EDDM13A0A1B0GTR0 161 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 PDXKO00764 312 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 XPO1O14980 1071 aaKnown RBP10.85□□□□□ -0.67
VPS29-208ENST00000550267 ACSL4O60488 711 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 USP12O75317 370 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 IGLV3-27P01718 113 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 PDIA4P13667 645 aaKnown RBP10.85□□□□□ -0.67
VPS29-208ENST00000550267 C5AR1P21730 350 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 DRD3P35462 400 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 METAP1P53582 386 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 SLC8A3P57103 927 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 VAC14Q08AM6 782 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 CLN3Q13286 438 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 ZNF211Q13398 564 aaPredicted RBP10.85□□□□□ -0.67
VPS29-208ENST00000550267 PITRM1Q5JRX3 1037 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 CDCP2Q5VXM1 449 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 NADSYN1Q6IA69 706 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.85□□□□□ -0.67
VPS29-208ENST00000550267 TMC6Q7Z403 805 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 PRPF39Q86UA1 669 aaKnown RBP10.85□□□□□ -0.67
VPS29-208ENST00000550267 LSMEM2Q8N112 164 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 CARNMT1Q8N4J0 409 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 ZNF557Q8N988 423 aaPredicted RBP10.85□□□□□ -0.67
VPS29-208ENST00000550267 KDM1BQ8NB78 822 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 HJURPQ8NCD3 748 aaPredicted RBP10.85□□□□□ -0.67
VPS29-208ENST00000550267 CCDC150Q8NCX0 1101 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 VCPIP1Q96JH7 1222 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 IPO9Q96P70 1041 aaKnown RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms