RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 LSM14AQ8ND56 463 aaKnown RBP4.52□□□□□ -1.69
VPS29-205ENST00000548539 ADPRHL1Q8NDY3 354 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 RUFY2Q8WXA3 655 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 CELF1Q92879 486 aaKnown RBP4.52□□□□□ -1.69
VPS29-205ENST00000548539 ZNF845Q96IR2 970 aaPredicted RBP4.52□□□□□ -1.69
VPS29-205ENST00000548539 HIC2Q96JB3 615 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 ZNF48Q96MX3 618 aaPredicted RBP4.52□□□□□ -1.69
VPS29-205ENST00000548539 NPAS1Q99742 590 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 SENP7Q9BQF6 1050 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 WACQ9BTA9 647 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 TAOK3Q9H2K8 898 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 ALKBH4Q9NXW9 302 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 TERF2IPQ9NYB0 399 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 FLRT1Q9NZU1 646 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 SERGEFQ9UGK8 458 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 CNOT7Q9UIV1 285 aaKnown RBP4.52□□□□□ -1.69
VPS29-205ENST00000548539 FBXO9Q9UK97 447 aaPredicted RBP4.52□□□□□ -1.69
VPS29-205ENST00000548539 SUFUQ9UMX1 484 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 CAMK2AQ9UQM7 478 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 CNPY2Q9Y2B0 182 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 CYP46A1Q9Y6A2 500 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 SPATA31A1Q5TZJ5 1347 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 TARM1B6A8C7 271 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 RTN3O95197 1032 aaPredicted RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 NHLRC4P0CG21 123 aaPredicted RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 CYP4B1P13584 511 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 TNNT1P13805 278 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 PKMP14618 531 aaKnown RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 CAPN3P20807 821 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 IDUAP35475 653 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 PAFAH1B1P43034 410 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 RXRGP48443 463 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 MVDP53602 400 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 SOX10P56693 466 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 ARHGAP8P85298 464 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 KRT32Q14532 448 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 NAA25Q14CX7 972 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 TSTQ16762 297 aaKnown RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 PFKFB3Q16875 520 aaPredicted RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 AP5B1Q2VPB7 878 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 TMEM119Q4V9L6 283 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 HYIQ5T013 277 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 GPATCH4Q5T3I0 446 aaKnown RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 FAM69AQ5T7M9 428 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 RUSC1-AS1Q66K80 236 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 ZNF626Q68DY1 528 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 FCRLBQ6BAA4 426 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 ZNF517Q6ZMY9 492 aaPredicted RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 ADGRG6Q86SQ4 1221 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 TMEM200AQ86VY9 491 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 RHPN2Q8IUC4 686 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 BRSK2Q8IWQ3 736 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 C16orf71Q8IYS4 520 aaPredicted RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 ENDOVQ8N8Q3 282 aaKnown RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 PNLDC1Q8NA58 520 aaKnown RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 KCNG4Q8TDN1 519 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 ADAMTS18Q8TE60 1221 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 C2CD4CQ8TF44 421 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 RPL36ALQ969Q0 106 aaKnown RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 ELP4Q96EB1 424 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 ADAD1Q96M93 576 aaKnown RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 FYTTD1Q96QD9 318 aaKnown RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 MPHOSPH8Q99549 860 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 OLA1Q9NTK5 396 aaKnown RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 ARL15Q9NXU5 204 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 FBXO4Q9UKT5 387 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 SIRT4Q9Y6E7 314 aaPredicted RBP4.51□□□□□ -1.69
VPS29-205ENST00000548539 WNT6Q9Y6F9 365 aa4.51□□□□□ -1.69
VPS29-205ENST00000548539 A0A1W2PPH5 198 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 FAM90A7PA6NKC0 464 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 PRSS47A8MTI9 375 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 FAM90A22PA8MWA6 464 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 FAM90A12PA8MX19 464 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 FAM90A23PA8MXZ1 464 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 BTBD19C9JJ37 291 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 H7C1Q1 480 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 RRHO14718 337 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 TNPO2O14787 897 aaKnown RBP4.5□□□□□ -1.69
VPS29-205ENST00000548539 METTL18O95568 372 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 PRR35P0CG20 571 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 ST6GAL1P15907 406 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 GSTM2P28161 218 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 TKTP29401 623 aaKnown RBP4.5□□□□□ -1.69
VPS29-205ENST00000548539 HNF1BP35680 557 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 RPS6KA3P51812 740 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 TUBA4AP68366 448 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 TBL3Q12788 808 aaKnown RBP4.5□□□□□ -1.69
VPS29-205ENST00000548539 BYSLQ13895 437 aaKnown RBP4.5□□□□□ -1.69
VPS29-205ENST00000548539 BAK1Q16611 211 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 HAUS3Q68CZ6 603 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 SLC30A9Q6PML9 568 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 DSTYKQ6XUX3 929 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 H1FNTQ75WM6 255 aaPredicted RBP4.5□□□□□ -1.69
VPS29-205ENST00000548539 MDGA2Q7Z553 956 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 R3HCC1LQ7Z5L2 792 aaKnown RBP4.5□□□□□ -1.69
VPS29-205ENST00000548539 CHSY1Q86X52 802 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 RFX6Q8HWS3 928 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 ATP2A3Q93084 1043 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 RITA1Q96K30 269 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 ZNF347Q96SE7 839 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms