RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 TLR8Q9NR97 1041 aaKnown RBP7.96□□□□□ -1.14
VPS13D-211ENST00000543710 AGPAT5Q9NUQ2 364 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 DNAJC28Q9NX36 388 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 PCDHB5Q9Y5E4 795 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 MAP2K7O14733 419 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 ATP9BO43861 1147 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 B3GAT3O94766 335 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 PGK2P07205 417 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 APRTP07741 180 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 CPA3P15088 417 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 AKT1P31749 480 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 HALP42357 657 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 KRT6CP48668 564 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 MFSD4BQ5TF39 518 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF720Q7Z2F6 126 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 DEPDC4Q8N2C3 294 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 MYDGFQ969H8 173 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 PANX3Q96QZ0 392 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 DHX33Q9H6R0 707 aaKnown RBP7.96□□□□□ -1.14
VPS13D-211ENST00000543710 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.96□□□□□ -1.14
VPS13D-211ENST00000543710 SH3BP4Q9P0V3 963 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 RCOR3Q9P2K3 495 aaPredicted RBP7.96□□□□□ -1.14
VPS13D-211ENST00000543710 COL14A1Q05707 1796 aaKnown RBP7.96□□□□□ -1.14
VPS13D-211ENST00000543710 FOXN1O15353 648 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 MED26O95402 600 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 GRK3P35626 688 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 SEC23AQ15436 765 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 SPDYAQ5MJ70 313 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 B3GNT6Q6ZMB0 384 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 SH3RF1Q7Z6J0 888 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 FBXO16Q8IX29 292 aaPredicted RBP7.96□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF655Q8N720 491 aaPredicted RBP7.96□□□□□ -1.14
VPS13D-211ENST00000543710 STK32AQ8WU08 396 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 ART4Q93070 314 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 NKD2Q969F2 451 aaPredicted RBP7.96□□□□□ -1.14
VPS13D-211ENST00000543710 SERPINB11Q96P15 392 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 RAD9AQ99638 391 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 RIBC2Q9H4K1 309 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.96□□□□□ -1.14
VPS13D-211ENST00000543710 EFR3BQ9Y2G0 817 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 LTBP4Q8N2S1 1624 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 ARVCFO00192 962 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF862O60290 1169 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 CLPTM1O96005 669 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 UQCRBP14927 111 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 VCAM1P19320 739 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 HLA-DPA1P20036 260 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 PTX3P26022 381 aaPredicted RBP7.95□□□□□ -1.14
VPS13D-211ENST00000543710 NFYCQ13952 458 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 SPATA19Q7Z5L4 167 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 CDR2LQ86X02 465 aaPredicted RBP7.95□□□□□ -1.14
VPS13D-211ENST00000543710 DHFR2Q86XF0 187 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 CDK20Q8IZL9 346 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 DCLK2Q8N568 766 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 TMEM145Q8NBT3 493 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 C19orf18Q8NEA5 215 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 WDR12Q9GZL7 423 aaKnown RBP7.95□□□□□ -1.14
VPS13D-211ENST00000543710 THAP2Q9H0W7 228 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 CDC42EP4Q9H3Q1 356 aaKnown RBP7.95□□□□□ -1.14
VPS13D-211ENST00000543710 TBC1D14Q9P2M4 693 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 HEY2Q9UBP5 337 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 ATP6V1HQ9UI12 483 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 TCRBV5S4A2TA0A5A2 114 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 MYO1GB0I1T2 1018 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 TMX2-CTNND1H3BSU7 103 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 UBDO15205 165 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 PPP2R1BP30154 601 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 CD151P48509 253 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 CLCN5P51795 746 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 MPP3Q13368 585 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 PLCL1Q15111 1095 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 EOGTQ5NDL2 527 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 HYIQ5T013 277 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 THEMIS2Q5TEJ8 643 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 GPIHBP1Q8IV16 184 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 AP3S1Q92572 193 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 IRF7Q92985 503 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.95□□□□□ -1.14
VPS13D-211ENST00000543710 TMEM161AQ9NX61 479 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 KLHL28Q9NXS3 571 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 CIDEBQ9UHD4 219 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 NRCAMQ92823 1304 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 KCNH1O95259 989 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 TCF3P15923 654 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 PTPRAP18433 802 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 ADSLP30566 484 aaPredicted RBP7.95□□□□□ -1.14
VPS13D-211ENST00000543710 MMP13P45452 471 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 PTP4A2Q12974 167 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 FRG1Q14331 258 aaKnown RBP7.95□□□□□ -1.14
VPS13D-211ENST00000543710 TCEA2Q15560 299 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 PAGE2BQ5JRK9 111 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 C10orf120Q5SQS8 335 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 INTS11Q5TA45 600 aaKnown RBP7.95□□□□□ -1.14
VPS13D-211ENST00000543710 CDC73Q6P1J9 531 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 PMF1Q6P1K2 205 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 KRT74Q7RTS7 529 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 CYP2U1Q7Z449 544 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 ADGRF2Q8IZF7 708 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 RTL3Q8N8U3 475 aaKnown RBP7.95□□□□□ -1.14
VPS13D-211ENST00000543710 RP9Q8TA86 221 aaKnown RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms