RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	MMAA	Q8IVH4	418 aa	Known RBP	13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	STK40	Q8N2I9	435 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	AADAT	Q8N5Z0	425 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	OR2T34	Q8NGX1	318 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	GPT2	Q8TD30	523 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	RNF34	Q969K3	372 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	CAMK1G	Q96NX5	476 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	RPRD1A	Q96P16	312 aa	Predicted RBP	13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	SPAG5	Q96R06	1193 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	TKTL2	Q9H0I9	626 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	KDM4C	Q9H3R0	1056 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	WDCP	Q9H6R7	721 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	SYNC	Q9H7C4	482 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	EBF2	Q9HAK2	575 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	TM7SF3	Q9NS93	570 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	NOCT	Q9UK39	431 aa	Known RBP	13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	STAP1	Q9ULZ2	295 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	ANKRD6	Q9Y2G4	727 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	FNDC3A	Q9Y2H6	1198 aa	Known RBP	13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	MSRB2	Q9Y3D2	182 aa		13.49	□□□□□ -0.25
SEMA4D-223	ENST00000540475	SYNJ2BP-COX16	A0A087WUM0	186 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475		A0A1W2PP55	124 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	VILL	O15195	856 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	ALOX15B	O15296	676 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	LAT	O43561	262 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	KRT37	O76014	449 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	CAPNS1	P04632	268 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	CYP1A1	P04798	512 aa	Predicted RBP	13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	DRD3	P35462	400 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	CTSK	P43235	329 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	CENPC	Q03188	943 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	ZNF177	Q13360	481 aa	Predicted RBP	13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	TEAD4	Q15561	434 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	RNF219	Q5W0B1	726 aa	Predicted RBP	13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	TRNP1	Q6NT89	227 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	UNQ6494/PRO21346	Q6UXR6	183 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	SH2D3C	Q8N5H7	860 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	ADAMTS14	Q8WXS8	1223 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	HAPLN3	Q96S86	360 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	COX16	Q9P0S2	106 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	ZNF212	Q9UDV6	495 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	PPM1H	Q9ULR3	514 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	HS3ST2	Q9Y278	367 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	PAXBP1	Q9Y5B6	917 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	SNX11	Q9Y5W9	270 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	CHD6	Q8TD26	2715 aa		13.48	□□□□□ -0.25
SEMA4D-223	ENST00000540475	TMEM8B	A6NDV4	472 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	LRRC72	A6NJI9	287 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	C1QTNF9B	B2RNN3	333 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	MCF2L	O15068	1137 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	SLC7A4	O43246	635 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	HYAL3	O43820	417 aa	Predicted RBP	13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	PCDHGA12	O60330	932 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	DFNA5	O60443	496 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	CNTN5	O94779	1100 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	FSBP	O95073	299 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	MME	P08473	750 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	C1QTNF9	P0C862	333 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	VAV1	P15498	845 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	CHRNB2	P17787	502 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	SPINK2	P20155	84 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	MMP8	P22894	467 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	RDX	P35241	583 aa	Known RBP	13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	FLT3	P36888	993 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	ADPRH	P54922	357 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	KRT31	Q15323	416 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	ALF	Q53S48	1182 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	KCNT1	Q5JUK3	1230 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	NCEH1	Q6PIU2	408 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	SETD3	Q86TU7	594 aa	Predicted RBP	13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	TBCB	Q99426	244 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	PSMB7	Q99436	277 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	OMD	Q99983	421 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	PDCL3	Q9H2J4	239 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	TAB2	Q9NYJ8	693 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	SIK3	Q9Y2K2	1263 aa		13.47	□□□□□ -0.25
SEMA4D-223	ENST00000540475	IGF2R	P11717	2491 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	CXorf51A	A0A1B0GTR3	108 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475		A0A1W2PR77	199 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	FLRT2	O43155	660 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	RNASEH2A	O75792	299 aa	Known RBP	13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	SULT1E1	P49888	294 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	GSC	P56915	257 aa	Predicted RBP	13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	RNASE9	P60153	205 aa	Known RBP	13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	FMO1	Q01740	532 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	CDR2	Q01850	454 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	NRG1	Q02297	640 aa	Predicted RBP	13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	DEUP1	Q05D60	604 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	DLG2	Q15700	870 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	FAM102A	Q5T9C2	384 aa	Predicted RBP	13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	TAF3	Q5VWG9	929 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	ZNF783	Q6ZMS7	281 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	MSANTD4	Q8NCY6	345 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	CPA5	Q8WXQ8	436 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	SNX19	Q92543	992 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	SIK2	Q9H0K1	926 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	VPS16	Q9H269	839 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	RETREG1	Q9H6L5	497 aa		13.46	□□□□□ -0.25
SEMA4D-223	ENST00000540475	FANCL	Q9NW38	375 aa		13.46	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms