RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CHSY1Q86X52 802 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 ZNF280BQ86YH2 543 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 MIB1Q86YT6 1006 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 PHTF2Q8N3S3 785 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 CFAP61Q8NHU2 1237 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 SCYL1Q96KG9 808 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 PHACTR1Q9C0D0 580 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 SSU72Q9NP77 194 aaKnown RBP17.28■□□□□ 0.36
USP28-208ENST00000540438 FETUBQ9UGM5 382 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 FNDC3AQ9Y2H6 1198 aaKnown RBP17.28■□□□□ 0.36
USP28-208ENST00000540438 EME2A4GXA9 379 aaPredicted RBP17.27■□□□□ 0.36
USP28-208ENST00000540438 PLIN3O60664 434 aa17.27■□□□□ 0.36
USP28-208ENST00000540438 ETFBP38117 255 aa17.27■□□□□ 0.36
USP28-208ENST00000540438 PARP6Q2NL67 630 aa17.27■□□□□ 0.36
USP28-208ENST00000540438 ATG16L1Q676U5 607 aa17.27■□□□□ 0.36
USP28-208ENST00000540438 C14orf80Q86SX3 495 aa17.27■□□□□ 0.36
USP28-208ENST00000540438 TOP6BLQ8N6T0 577 aa17.27■□□□□ 0.36
USP28-208ENST00000540438 ZNF781Q8N8C0 355 aa17.27■□□□□ 0.36
USP28-208ENST00000540438 DQX1Q8TE96 717 aaKnown RBP17.27■□□□□ 0.36
USP28-208ENST00000540438 TRIB2Q92519 343 aa17.27■□□□□ 0.36
USP28-208ENST00000540438 PPCSQ9HAB8 311 aa17.27■□□□□ 0.36
USP28-208ENST00000540438 EBF2Q9HAK2 575 aa17.27■□□□□ 0.36
USP28-208ENST00000540438 FBXW11Q9UKB1 542 aa17.27■□□□□ 0.36
USP28-208ENST00000540438 A0A096LPK6 155 aa17.27■□□□□ 0.35
USP28-208ENST00000540438 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.27■□□□□ 0.35
USP28-208ENST00000540438 HAS3O00219 553 aa17.27■□□□□ 0.35
USP28-208ENST00000540438 GABRDO14764 452 aa17.27■□□□□ 0.35
USP28-208ENST00000540438 PGAM1P18669 254 aa17.27■□□□□ 0.35
USP28-208ENST00000540438 CALB2P22676 271 aa17.27■□□□□ 0.35
USP28-208ENST00000540438 CRHR1P34998 444 aa17.27■□□□□ 0.35
USP28-208ENST00000540438 NRG4Q8WWG1 115 aa17.27■□□□□ 0.35
USP28-208ENST00000540438 FAXDC2Q96IV6 333 aa17.27■□□□□ 0.35
USP28-208ENST00000540438 NDNQ99608 321 aa17.27■□□□□ 0.35
USP28-208ENST00000540438 BFARQ9NZS9 450 aa17.27■□□□□ 0.35
USP28-208ENST00000540438 SIRPGQ9P1W8 387 aa17.27■□□□□ 0.35
USP28-208ENST00000540438 NEMP2A6NFY4 417 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 SMAPO00193 183 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 DCXO43602 365 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 OPHN1O60890 802 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 SLC4A1P02730 911 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 PIRTP0C851 137 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 TSPAN8P19075 237 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 PLK1P53350 603 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 NIPAL4Q0D2K0 466 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 GRM3Q14832 879 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 ANKRD20A4Q4UJ75 823 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 MBLAC2Q68D91 279 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 SLC41A1Q8IVJ1 513 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 MAPK15Q8TD08 544 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 CASP10Q92851 521 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 RSRC1Q96IZ7 334 aaKnown RBP17.26■□□□□ 0.35
USP28-208ENST00000540438 NT5C1B-RDH14C9J2C7 533 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 TBX10O75333 385 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 ASGR1P07306 291 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 FDFT1P37268 417 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 PTPRCAPQ14761 206 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 ESRP1Q6NXG1 681 aaKnown RBP17.26■□□□□ 0.35
USP28-208ENST00000540438 PSTKQ8IV42 348 aaKnown RBP17.26■□□□□ 0.35
USP28-208ENST00000540438 PPP4R1Q8TF05 950 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 NMUR1Q9HB89 426 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 ACTL7AQ9Y615 435 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 TMEM233B4DJY2 109 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 RALBP11234 206 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 CCND3P30281 292 aaPredicted RBP17.26■□□□□ 0.35
USP28-208ENST00000540438 ABL2P42684 1182 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 SLC39A12Q504Y0 691 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 TCHHL1Q5QJ38 904 aaPredicted RBP17.26■□□□□ 0.35
USP28-208ENST00000540438 TMEM198Q66K66 360 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 TLDC1Q6P9B6 456 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 BHLHA9Q7RTU4 235 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 KCNMB4Q86W47 210 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.26■□□□□ 0.35
USP28-208ENST00000540438 ZSCAN18Q8TBC5 510 aaPredicted RBP17.26■□□□□ 0.35
USP28-208ENST00000540438 KCTD4Q8WVF5 259 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 SLC27A5Q9Y2P5 690 aa17.26■□□□□ 0.35
USP28-208ENST00000540438 C2P06681 752 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 SERPINB5P36952 375 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 FLT3LGP49771 235 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 CCNYL1Q8N7R7 359 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 FICDQ9BVA6 458 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 TASP1Q9H6P5 420 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 CYP4F12Q9HCS2 524 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 ZNF180Q9UJW8 692 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 PLA2G4CQ9UP65 541 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 HHLA1C9JL84 531 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 NEBLO76041 1014 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 HDCP19113 662 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 GARSP41250 739 aaKnown RBP17.25■□□□□ 0.35
USP28-208ENST00000540438 CNGA3Q16281 694 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 UPP1Q16831 310 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 FBXO48Q5FWF7 155 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 PYDC1Q8WXC3 89 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 NT5C3BQ969T7 300 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 SLC2A13Q96QE2 648 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 ANKRD12Q6UB98 2062 aa17.25■□□□□ 0.35
USP28-208ENST00000540438 ZCWPW2A0A1B0GU75 182 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 JUNP05412 331 aaKnown RBP17.24■□□□□ 0.35
USP28-208ENST00000540438 CPA3P15088 417 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 PAX7P23759 505 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 MPSTP25325 297 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms