RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 VAV1P15498 845 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 PDGFRAP16234 1089 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 EIF2S3P41091 472 aaKnown RBP13.99□□□□□ -0.17
SS18-204ENST00000539244 OXCT1P55809 520 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 MARSP56192 900 aaKnown RBP13.99□□□□□ -0.17
SS18-204ENST00000539244 NUCB2P80303 420 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 BNIP3Q12983 259 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 TARDBPQ13148 414 aaKnown RBP eCLIP13.99□□□□□ -0.172e-8■■□□□ 13.7
SS18-204ENST00000539244 HES3Q5TGS1 186 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 TBC1D3GQ6DHY5 549 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 TBC1D3CQ6IPX1 549 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 CXorf57Q6NSI4 855 aaKnown RBP13.99□□□□□ -0.17
SS18-204ENST00000539244 DENND1BQ6P3S1 775 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.99□□□□□ -0.17
SS18-204ENST00000539244 PRPF39Q86UA1 669 aaKnown RBP13.99□□□□□ -0.17
SS18-204ENST00000539244 TRIM69Q86WT6 500 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 TRIM59Q8IWR1 403 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 TBC1D3Q8IZP1 549 aaPredicted RBP13.99□□□□□ -0.17
SS18-204ENST00000539244 ATP6V0D2Q8N8Y2 350 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 ALG14Q96F25 216 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 UBL7Q96S82 380 aaPredicted RBP13.99□□□□□ -0.17
SS18-204ENST00000539244 PRORYQ9H606 182 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 HOOK1Q9UJC3 728 aaKnown RBP13.99□□□□□ -0.17
SS18-204ENST00000539244 EIF4E1BA6NMX2 242 aaKnown RBP13.98□□□□□ -0.17
SS18-204ENST00000539244 TK2O00142 265 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 ALOX15BO15296 676 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 MED7O43513 233 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 TLX3O43711 291 aaPredicted RBP13.98□□□□□ -0.17
SS18-204ENST00000539244 ATP9BO43861 1147 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 GLI1P08151 1106 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 SLC2A3P11169 496 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 CKMT2P17540 419 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 METAP1P53582 386 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 CLDN6P56747 220 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 PITX1P78337 314 aaPredicted RBP13.98□□□□□ -0.17
SS18-204ENST00000539244 KCNH2Q12809 1159 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 AGBL4Q5VU57 503 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 FAM46CQ5VWP2 391 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 DSG4Q86SJ6 1040 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 SNIP1Q8TAD8 396 aaKnown RBP13.98□□□□□ -0.17
SS18-204ENST00000539244 ZNF606Q8WXB4 792 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 OR8D1Q8WZ84 308 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 DCBLD2Q96PD2 775 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 PPP1R9BQ96SB3 815 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 SLC12A6Q9UHW9 1150 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 SARDHQ9UL12 918 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 PPM1HQ9ULR3 514 aa13.98□□□□□ -0.17
SS18-204ENST00000539244 BICDL2A1A5D9 508 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 MCF2LO15068 1137 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 RNGTTO60942 597 aaKnown RBP13.97□□□□□ -0.17
SS18-204ENST00000539244 RTN2O75298 545 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 GNA14O95837 355 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 KRT5P13647 590 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 ACP1P24666 158 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 ITPKBP27987 946 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 CCR1P32246 355 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 MTA1Q13330 715 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 PDCLQ13371 301 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 PROX2Q3B8N5 592 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 RABGAP1LQ5R372 815 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 CIR1Q86X95 450 aaPredicted RBP13.97□□□□□ -0.17
SS18-204ENST00000539244 PIP4K2CQ8TBX8 421 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 SLC2A13Q96QE2 648 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 FEM1AQ9BSK4 669 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 INTS2Q9H0H0 1204 aaKnown RBP13.97□□□□□ -0.17
SS18-204ENST00000539244 PREBQ9HCU5 417 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 ASNSD1Q9NWL6 643 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 MAN1B1Q9UKM7 699 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 OR51B4Q9Y5P0 310 aa13.97□□□□□ -0.17
SS18-204ENST00000539244 GCN1Q92616 2671 aaKnown RBP13.96□□□□□ -0.17
SS18-204ENST00000539244 GOLGA6L4A6NEF3 574 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 PPP1R3GB7ZBB8 358 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 C1QTNF3-AMACRE9PGA6 284 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 PRAMEF26H0Y7S4 382 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 LETM1O95202 739 aaPredicted RBP13.96□□□□□ -0.17
SS18-204ENST00000539244 AFPP02771 609 aaKnown RBP13.96□□□□□ -0.17
SS18-204ENST00000539244 BMP6P22004 513 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 GNA15P30679 374 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 CDK17Q00537 523 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 SEMG2Q02383 582 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 CNTN1Q12860 1018 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 STAT4Q14765 748 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 SETMARQ53H47 684 aaPredicted RBP13.96□□□□□ -0.17
SS18-204ENST00000539244 FBXL22Q6P050 247 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 LRRC69Q6ZNQ3 347 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 ENOSF1Q7L5Y1 443 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 TMEM145Q8NBT3 493 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 LSM14AQ8ND56 463 aaKnown RBP13.96□□□□□ -0.17
SS18-204ENST00000539244 NELFBQ8WX92 580 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 SLC25A13Q9UJS0 675 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 TBC1D30Q9Y2I9 924 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 AK5Q9Y6K8 562 aa13.96□□□□□ -0.17
SS18-204ENST00000539244 ATXN7O15265 892 aaPredicted RBP13.95□□□□□ -0.18
SS18-204ENST00000539244 RRP8O43159 456 aaKnown RBP13.95□□□□□ -0.18
SS18-204ENST00000539244 HSF2BPO75031 334 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 MAT2AP31153 395 aaKnown RBP13.95□□□□□ -0.18
SS18-204ENST00000539244 TAS2R38P59533 333 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 E2F1Q01094 437 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 INSM1Q01101 510 aaPredicted RBP13.95□□□□□ -0.18
SS18-204ENST00000539244 CENPCQ03188 943 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms