RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 CCND1P24385 295 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 PTPN4P29074 926 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 TYK2P29597 1187 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 CCND3P30281 292 aaPredicted RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 GRIA1P42261 906 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 MAGEA12P43365 314 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 AFF1P51825 1210 aaKnown RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 KPNA2P52292 529 aaKnown RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 KPNA1P52294 538 aaPredicted RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 NDST2P52849 883 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 PRMT2P55345 433 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 FAM189BP81408 668 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 OCRLQ01968 901 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 BST1Q10588 318 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 ASPHQ12797 758 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 SF3A3Q12874 501 aaKnown RBP eCLIP6.77□□□□□ -1.33
USP28-206ENST00000538224 STX3Q13277 289 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 LAMB3Q13751 1172 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 CHI3L2Q15782 390 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 ANKRD20A4Q4UJ75 823 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 PAN2Q504Q3 1202 aaKnown RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 TAF1BQ53T94 588 aaPredicted RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 FAM72AQ5TYM5 149 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 MANEALQ5VSG8 457 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 FAM72DQ6L9T8 149 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 ZNF280DQ6N043 979 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 RWDD4Q6NW29 188 aaKnown RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 CD300LGQ6UXG3 332 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 CLNKQ7Z7G1 428 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 FAM72BQ86X60 149 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 ABI1Q8IZP0 508 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 NUP93Q8N1F7 819 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 CCDC33Q8N5R6 958 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 NPWQ8N729 165 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.77□□□□□ -1.33
USP28-206ENST00000538224 RTL3Q8N8U3 475 aaKnown RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 ATP6V0D2Q8N8Y2 350 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 PPHLN1Q8NEY8 458 aaKnown RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 OR52K1Q8NGK4 314 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 RDH11Q8TC12 318 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 PXYLP1Q8TE99 480 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 NSMCE1Q8WV22 266 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 CEP295NLQ96MC4 621 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 ANKRD27Q96NW4 1050 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 FCRL5Q96RD9 977 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 CDK5RAP1Q96SZ6 601 aaKnown RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 IL12RB2Q99665 862 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 TBL1YQ9BQ87 522 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 PAAF1Q9BRP4 392 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 TMEM120AQ9BXJ8 343 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 MRPL9Q9BYD2 267 aaKnown RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 MAGEB5Q9BZ81 275 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 PRKD2Q9BZL6 878 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 SLC13A1Q9BZW2 595 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 ARHGAP39Q9C0H5 1083 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 MMADHCQ9H3L0 296 aaPredicted RBP6.77□□□□□ -1.33
USP28-206ENST00000538224 RETREG1Q9H6L5 497 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 NOD2Q9HC29 1040 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 ENTPD7Q9NQZ7 604 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 TMPRSS4Q9NRS4 437 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 TMEM30AQ9NV96 361 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 THAP1Q9NVV9 213 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 TMEM161AQ9NX61 479 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 CACNG4Q9UBN1 327 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 SRRDQ9UH36 339 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 BAIAP2L1Q9UHR4 511 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 GGT7Q9UJ14 662 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 DCTN4Q9UJW0 460 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 TLR6Q9Y2C9 796 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 PCDHB5Q9Y5E4 795 aa6.77□□□□□ -1.33
USP28-206ENST00000538224 NUP205Q92621 2012 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 TMEM114B3SHH9 223 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 E9PAM4 449 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 H7C4K7 107 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 DFFAO00273 331 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 UGT1A9O60656 530 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 PLIN3O60664 434 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 PAGE1O75459 146 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 TADA2AO75478 443 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 PIAS1O75925 651 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 ALDOAP04075 364 aaKnown RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 MYCNP04198 464 aaPredicted RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 KRT16P08779 473 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 DLDP09622 509 aaKnown RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 MYL2P10916 166 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 COL6A2P12110 1019 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 RHOQP17081 205 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 YY1P25490 414 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 TARSP26639 723 aaKnown RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 CD68P34810 354 aaPredicted RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 OR1G1P47890 313 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 KCNJ2P63252 427 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 OVGP1Q12889 678 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 ZBTB17Q13105 803 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 MPP3Q13368 585 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 BFSP2Q13515 415 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 SLC39A12Q504Y0 691 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 FASTKD1Q53R41 847 aaKnown RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 PCID2Q5JVF3 399 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 WASHC2DQ5SRD0 308 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms