RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 YY1AP1Q9H869 796 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 BRF2Q9HAW0 419 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 CYP4F11Q9HBI6 524 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 TLR8Q9NR97 1041 aaKnown RBP3.55□□□□□ -1.84
CD44-229ENST00000528672 TBCCD1Q9NVR7 557 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 ASB6Q9NWX5 421 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 ZDHHC7Q9NXF8 308 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 KCND2Q9NZV8 630 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 HCN3Q9P1Z3 774 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 CD207Q9UJ71 328 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 RPS6KA6Q9UK32 745 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 TMEM5Q9Y2B1 443 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 LYVE1Q9Y5Y7 322 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 KDM3AQ9Y4C1 1321 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 FAM90A7PA6NKC0 464 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 C3orf70A6NLC5 250 aaPredicted RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 FAM90A22PA8MWA6 464 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 FAM90A12PA8MX19 464 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 FAM90A23PA8MXZ1 464 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 TEX22C9J3V5 150 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 GRM8O00222 908 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 VILLO15195 856 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 IPO8O15397 1037 aaKnown RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 PROM1O43490 865 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 DKC1O60832 514 aaKnown RBP eCLIP3.54□□□□□ -1.84
CD44-229ENST00000528672 PMPCBO75439 489 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 ESRRBO95718 433 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 MBPP02686 304 aaPredicted RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 CSH1P0DML2 217 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 CSH2P0DML3 217 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 CYP2D6P10635 497 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 ZFXP17010 805 aaPredicted RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 GKP32189 559 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 CXCR5P32302 372 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 ARL1P40616 181 aaPredicted RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 SNX16P57768 344 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 FOXL2P58012 376 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 TAS2R50P59544 299 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 SUMO2P61956 95 aaKnown RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 CYP4F2P78329 520 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 SIM1P81133 766 aaPredicted RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 CDK18Q07002 472 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 GAB1Q13480 694 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 DNASE1L3Q13609 305 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 BECN1Q14457 450 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 PSMD6Q15008 389 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 GPR162Q16538 588 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 FAM187BQ17R55 369 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 ZNF766Q5HY98 468 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 HECTD2Q5U5R9 776 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 KRT74Q7RTS7 529 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 ANKRD13BQ86YJ7 626 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 CCDC105Q8IYK2 499 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 TAGAPQ8N103 731 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 CNTROBQ8N137 903 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 LCORLQ8N3X6 602 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 SRBD1Q8N5C6 995 aaKnown RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.54□□□□□ -1.84
CD44-229ENST00000528672 OR52L2PQ8NGH6 319 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 KCNJ9Q92806 393 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 FAM120BQ96EK7 910 aaKnown RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 RNFT2Q96EX2 444 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 TRMT61AQ96FX7 289 aaKnown RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 FEM1CQ96JP0 617 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 C5orf34Q96MH7 638 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 TTC14Q96N46 770 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 ZMAT2Q96NC0 199 aaKnown RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 YME1L1Q96TA2 773 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 AGAP2Q99490 1192 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 NPAS1Q99742 590 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 CTDSP1Q9GZU7 261 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 TTYH1Q9H313 450 aaPredicted RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 MUC13Q9H3R2 512 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 ZCCHC17Q9NP64 241 aaKnown RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 SEMA4BQ9NPR2 832 aaPredicted RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 SH3GLB2Q9NR46 395 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 PCDHB16Q9NRJ7 776 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 THAP1Q9NVV9 213 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 HCFC1R1Q9NWW0 138 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 MGAT4CQ9UBM8 478 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 CFDP1Q9UEE9 299 aaPredicted RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 SARDHQ9UL12 918 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 PCDHGB4Q9UN71 923 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 MAGED1Q9Y5V3 778 aaPredicted RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 SNX8Q9Y5X2 465 aa3.54□□□□□ -1.84
CD44-229ENST00000528672 COPG1Q9Y678 874 aaKnown RBP3.54□□□□□ -1.84
CD44-229ENST00000528672 CYP3A7-CYP3A51PA0A087WV96 503 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 NPIPB15A6NHN6 443 aaPredicted RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 TSPY2A6NKD2 308 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 C16orf96A6NNT2 1141 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 TNFSF14O43557 240 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 PEX1O43933 1283 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 METTL18O95568 372 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 ONECUT2O95948 504 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 ALDOAP04075 364 aaKnown RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 RPN1P04843 607 aaKnown RBP3.53□□□□□ -1.84
CD44-229ENST00000528672 URODP06132 367 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 TSPY3P0CV98 308 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 TSPY8P0CW00 308 aa3.53□□□□□ -1.84
CD44-229ENST00000528672 TMIGD3P0DMS9 266 aaPredicted RBP3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms