RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 MUC3BQ9H195 1237 aa13.13□□□□□ -0.31
CLCN3-210ENST00000515420 TMPRSS4Q9NRS4 437 aa13.13□□□□□ -0.31
CLCN3-210ENST00000515420 DLL3Q9NYJ7 618 aa13.13□□□□□ -0.31
CLCN3-210ENST00000515420 ZNF212Q9UDV6 495 aa13.13□□□□□ -0.31
CLCN3-210ENST00000515420 EVLQ9UI08 416 aaPredicted RBP13.13□□□□□ -0.31
CLCN3-210ENST00000515420 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.13□□□□□ -0.31
CLCN3-210ENST00000515420 SCINQ9Y6U3 715 aa13.13□□□□□ -0.31
CLCN3-210ENST00000515420 GON4LQ3T8J9 2241 aa13.13□□□□□ -0.31
CLCN3-210ENST00000515420 LAMA1P25391 3075 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 EIF3CLB5ME19 914 aaKnown RBP13.12□□□□□ -0.31
CLCN3-210ENST00000515420 ATP9BO43861 1147 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 RNASEH1O60930 286 aaKnown RBP13.12□□□□□ -0.31
CLCN3-210ENST00000515420 SRGAP2O75044 1071 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 FTLP02792 175 aaPredicted RBP13.12□□□□□ -0.31
CLCN3-210ENST00000515420 DNTTP04053 509 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 OR1E1P30953 314 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 HNRNPH3P31942 346 aaKnown RBP13.12□□□□□ -0.31
CLCN3-210ENST00000515420 HTR7P34969 479 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 ETFBP38117 255 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 PTGER3P43115 390 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 CTSOP43234 321 aaPredicted RBP13.12□□□□□ -0.31
CLCN3-210ENST00000515420 ID4P47928 161 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 MAPKAPK2P49137 400 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 LIMK1P53667 647 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 ZNF33AQ06730 810 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 ELAVL3Q14576 367 aaKnown RBP13.12□□□□□ -0.31
CLCN3-210ENST00000515420 PUM1Q14671 1186 aaKnown RBP eCLIP13.12□□□□□ -0.31
CLCN3-210ENST00000515420 RAB6CQ53S08 254 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 C9orf64Q5T6V5 341 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 SPECC1LQ69YQ0 1117 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 USP30Q70CQ3 517 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 SLFN11Q7Z7L1 901 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 DRC7Q8IY82 874 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 TMEFF1Q8IYR6 380 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 ERLEC1Q96DZ1 483 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 RPL10LQ96L21 214 aaKnown RBP13.12□□□□□ -0.31
CLCN3-210ENST00000515420 EIF3CQ99613 913 aaKnown RBP13.12□□□□□ -0.31
CLCN3-210ENST00000515420 NCAPGQ9BPX3 1015 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 RAB6CQ9H0N0 254 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 MRPL47Q9HD33 250 aaKnown RBP13.12□□□□□ -0.31
CLCN3-210ENST00000515420 MPP6Q9NZW5 540 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 HS3ST2Q9Y278 367 aa13.12□□□□□ -0.31
CLCN3-210ENST00000515420 TMEM191CA6NGB0 347 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 TMCO5BA8MYB1 307 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 TTC34A8MYJ7 566 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 ALOX15BO15296 676 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 SIN3BO75182 1162 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 PLEKP08567 350 aaPredicted RBP13.11□□□□□ -0.31
CLCN3-210ENST00000515420 SKILP12757 684 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 RHOQP17081 205 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 CASP14P31944 242 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 L1CAMP32004 1257 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 CLCN6P51797 869 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 RPS14P62263 151 aaKnown RBP13.11□□□□□ -0.31
CLCN3-210ENST00000515420 AASDHQ4L235 1098 aaPredicted RBP13.11□□□□□ -0.31
CLCN3-210ENST00000515420 EFHC2Q5JST6 749 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 SYCP2LQ5T4T6 812 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 TMC6Q7Z403 805 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 TFAP2DQ7Z6R9 452 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 NLRP14Q86W24 1093 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 SLC41A1Q8IVJ1 513 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 CCDC185Q8N715 623 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 CEP76Q8TAP6 659 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 FRS2Q8WU20 508 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 PTPRN2Q92932 1015 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 ZNF653Q96CK0 615 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 RMDN1Q96DB5 314 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 TBC1D31Q96DN5 1066 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 TOE1Q96GM8 510 aaKnown RBP13.11□□□□□ -0.31
CLCN3-210ENST00000515420 PSMB7Q99436 277 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 RTKNQ9BST9 563 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 CD93Q9NPY3 652 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 TMEM248Q9NWD8 314 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 CNOT8Q9UFF9 292 aaKnown RBP13.11□□□□□ -0.31
CLCN3-210ENST00000515420 SUSD2Q9UGT4 822 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 ADAMTS1Q9UHI8 967 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 SLCO3A1Q9UIG8 710 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 PILRBQ9UKJ0 227 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 CDV3Q9UKY7 258 aaKnown RBP13.11□□□□□ -0.31
CLCN3-210ENST00000515420 NEU3Q9UQ49 428 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 SNX10Q9Y5X0 201 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 CACNA1EQ15878 2313 aa13.11□□□□□ -0.31
CLCN3-210ENST00000515420 KHNYNO15037 678 aaKnown RBP13.1□□□□□ -0.31
CLCN3-210ENST00000515420 LRIG2O94898 1065 aa13.1□□□□□ -0.31
CLCN3-210ENST00000515420 ADH1BP00325 375 aa13.1□□□□□ -0.31
CLCN3-210ENST00000515420 STK19P49842 368 aaPredicted RBP13.1□□□□□ -0.31
CLCN3-210ENST00000515420 SLC20A2Q08357 652 aa13.1□□□□□ -0.31
CLCN3-210ENST00000515420 ACAP1Q15027 740 aa13.1□□□□□ -0.31
CLCN3-210ENST00000515420 SF3A2Q15428 464 aaKnown RBP13.1□□□□□ -0.31
CLCN3-210ENST00000515420 CST6Q15828 149 aa13.1□□□□□ -0.31
CLCN3-210ENST00000515420 DUOXA1Q1HG43 343 aa13.1□□□□□ -0.31
CLCN3-210ENST00000515420 RSPO4Q2I0M5 234 aaPredicted RBP13.1□□□□□ -0.31
CLCN3-210ENST00000515420 WDR45BQ5MNZ6 344 aa13.1□□□□□ -0.31
CLCN3-210ENST00000515420 SLC23A3Q6PIS1 610 aa13.1□□□□□ -0.31
CLCN3-210ENST00000515420 DSG4Q86SJ6 1040 aa13.1□□□□□ -0.31
CLCN3-210ENST00000515420 SH2D3CQ8N5H7 860 aa13.1□□□□□ -0.31
CLCN3-210ENST00000515420 CPLX3Q8WVH0 158 aa13.1□□□□□ -0.31
CLCN3-210ENST00000515420 DNASE2BQ8WZ79 361 aa13.1□□□□□ -0.31
CLCN3-210ENST00000515420 PIGKQ92643 395 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms