RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 TCAF2A6NFQ2 919 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 TP73O15350 636 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 MAFKO60675 156 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 PAPLNO95428 1278 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 CYBBP04839 570 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 TPSB2P20231 275 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 PTPN3P26045 913 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 SLC6A4P31645 630 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 MAGEA4P43358 317 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 IFI35P80217 286 aaPredicted RBP16.37■□□□□ 0.21
NUP54-214ENST00000514307 IL10RBQ08334 325 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 SEMA5AQ13591 1074 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 TPSAB1Q15661 275 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 HIF1AQ16665 826 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 MPPE1Q53F39 396 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 ALFQ53S48 1182 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 MPP7Q5T2T1 576 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 ARTNQ5T4W7 220 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 DENND2CQ68D51 928 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 RFWD3Q6PCD5 774 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 GRASPQ7Z6J2 395 aaPredicted RBP16.37■□□□□ 0.21
NUP54-214ENST00000514307 ZNF567Q8N184 647 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 CFAP52Q8N1V2 620 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 BBS5Q8N3I7 341 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 CPXM2Q8N436 756 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 KIAA1958Q8N8K9 716 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 HJURPQ8NCD3 748 aaPredicted RBP16.37■□□□□ 0.21
NUP54-214ENST00000514307 ZFRQ96KR1 1074 aaKnown RBP16.37■□□□□ 0.21
NUP54-214ENST00000514307 XAB2Q9HCS7 855 aaKnown RBP16.37■□□□□ 0.21
NUP54-214ENST00000514307 TDP1Q9NUW8 608 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 TBC1D14Q9P2M4 693 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 AAR2Q9Y312 384 aaKnown RBP16.37■□□□□ 0.21
NUP54-214ENST00000514307 RANBP2P49792 3224 aaKnown RBP16.36■□□□□ 0.21
NUP54-214ENST00000514307 KCNK1O00180 336 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 LEFTY2O00292 366 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 SLC9A3R1O14745 358 aaPredicted RBP16.36■□□□□ 0.21
NUP54-214ENST00000514307 TSPAN3O60637 253 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 ANXA9O76027 345 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 METTL18O95568 372 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 APRTP07741 180 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 VAV1P15498 845 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 GJA1P17302 382 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 WEE1P30291 646 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 SERINC3Q13530 473 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 KCNJ11Q14654 390 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 TEAD2Q15562 447 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 DNAJC21Q5F1R6 531 aaKnown RBP16.36■□□□□ 0.21
NUP54-214ENST00000514307 ZNF697Q5TEC3 545 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 MARC1Q5VT66 337 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 Q6ZNB5 142 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 ADGRD2Q7Z7M1 963 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 ZNF707Q96C28 371 aaPredicted RBP16.36■□□□□ 0.21
NUP54-214ENST00000514307 ZNF599Q96NL3 588 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 IL12RB2Q99665 862 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 SEMA4AQ9H3S1 761 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 SP110Q9HB58 689 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 EIF2B3Q9NR50 452 aaKnown RBP16.36■□□□□ 0.21
NUP54-214ENST00000514307 RBM22Q9NW64 420 aaKnown RBP eCLIP16.36■□□□□ 0.21
NUP54-214ENST00000514307 OGFRQ9NZT2 677 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 LMCD1Q9NZU5 365 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 RSPH14Q9UHP6 348 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 TBC1D30Q9Y2I9 924 aa16.36■□□□□ 0.21
NUP54-214ENST00000514307 GOLGA6L10A6NI86 522 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 H0Y626 953 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 ZBTB24O43167 697 aaPredicted RBP16.35■□□□□ 0.21
NUP54-214ENST00000514307 TTC4O95801 387 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 RHOCP08134 193 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 MLNP12872 115 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 TSHRP16473 764 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 IFNAR2P48551 515 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 GNA12Q03113 381 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 IFFO1Q0D2I5 559 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 KCTD19Q17RG1 926 aaPredicted RBP16.35■□□□□ 0.21
NUP54-214ENST00000514307 PRSS36Q5K4E3 855 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 TMEM184AQ6ZMB5 413 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 TP53INP2Q8IXH6 220 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 FAM217AQ8IXS0 508 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 PALM2Q8IXS6 379 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 TAB3Q8N5C8 712 aaPredicted RBP16.35■□□□□ 0.21
NUP54-214ENST00000514307 ZNF557Q8N988 423 aaPredicted RBP16.35■□□□□ 0.21
NUP54-214ENST00000514307 NETO2Q8NC67 525 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 TSEN2Q8NCE0 465 aaKnown RBP16.35■□□□□ 0.21
NUP54-214ENST00000514307 ADAMTS19Q8TE59 1207 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 SH3RF2Q8TEC5 729 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 PYROXD1Q8WU10 500 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 LRRN4Q8WUT4 740 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 MAML1Q92585 1016 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 ARHGEF2Q92974 986 aaKnown RBP16.35■□□□□ 0.21
NUP54-214ENST00000514307 LRRC39Q96DD0 335 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 HMCESQ96FZ2 354 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 AGAP3Q96P47 875 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 NSUN3Q9H649 340 aaKnown RBP16.35■□□□□ 0.21
NUP54-214ENST00000514307 IGFLR1Q9H665 355 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 NOL6Q9H6R4 1146 aaKnown RBP16.35■□□□□ 0.21
NUP54-214ENST00000514307 SAYSD1Q9NPB0 183 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 MED4Q9NPJ6 270 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 NDFIP2Q9NV92 336 aa16.35■□□□□ 0.21
NUP54-214ENST00000514307 KDELR3O43731 214 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 GREM1O60565 184 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 TBL1XO60907 577 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms