RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 PGAP3Q96FM1 320 aaPredicted RBP10.07□□□□□ -0.8
CLIP1-204ENST00000501271 SYT17Q9BSW7 474 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 COLEC11Q9BWP8 271 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 OSBPL1AQ9BXW6 950 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 STN1Q9H668 368 aaKnown RBP10.07□□□□□ -0.8
CLIP1-204ENST00000501271 MIOSQ9NXC5 875 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 BFARQ9NZS9 450 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 ADAM28Q9UKQ2 775 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 RAD54BQ9Y620 910 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 FNDC1Q4ZHG4 1894 aaPredicted RBP10.07□□□□□ -0.8
CLIP1-204ENST00000501271 PDHA1P08559 390 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 CPA3P15088 417 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 ALOX15P16050 662 aaPredicted RBP10.07□□□□□ -0.8
CLIP1-204ENST00000501271 MX2P20592 715 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 GRK2P25098 689 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 HCAR3P49019 387 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 HARS2P49590 506 aaKnown RBP10.07□□□□□ -0.8
CLIP1-204ENST00000501271 MICAL1Q8TDZ2 1067 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 SCG3Q8WXD2 468 aaKnown RBP10.07□□□□□ -0.8
CLIP1-204ENST00000501271 PAAF1Q9BRP4 392 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 TKTL2Q9H0I9 626 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 C1orf21Q9H246 121 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 CHRAC1Q9NRG0 131 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 DNAJC28Q9NX36 388 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 UBP1Q9NZI7 540 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 SORCS3Q9UPU3 1222 aa10.07□□□□□ -0.8
CLIP1-204ENST00000501271 APOBEC2Q9Y235 224 aaKnown RBP10.07□□□□□ -0.8
CLIP1-204ENST00000501271 PTPRDP23468 1912 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 A0A096LPK6 155 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.06□□□□□ -0.8
CLIP1-204ENST00000501271 F8W8V4 182 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 NCAM2O15394 837 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 LRIG2O94898 1065 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 FAM163BP0C2L3 166 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 TPH1P17752 444 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 PAX7P23759 505 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 SPRP35270 261 aaPredicted RBP10.06□□□□□ -0.8
CLIP1-204ENST00000501271 LHX1P48742 406 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 ACTR3P61158 418 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 SLC25A3Q00325 362 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 CCDC153Q494R4 210 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 NAPRTQ6XQN6 538 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 CLEC14AQ86T13 490 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 KCNMB4Q86W47 210 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 SLC25A41Q8N5S1 370 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 DPF3Q92784 378 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 CELF6Q96J87 481 aaKnown RBP10.06□□□□□ -0.8
CLIP1-204ENST00000501271 FAM105AQ9NUU6 356 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 OR12D3Q9UGF7 316 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 SUFUQ9UMX1 484 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 SOX13Q9UN79 622 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 A0A088AWK7 358 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 CCDC78A2IDD5 438 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 CASTOR2A6NHX0 329 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 ARHGAP42A6NI28 874 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 G3V2L1 256 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 GOLGA8TH3BQL2 631 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 CIB2O75838 187 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 CXCR3P49682 368 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 PURAQ00577 322 aaKnown RBP10.06□□□□□ -0.8
CLIP1-204ENST00000501271 FRG1Q14331 258 aaKnown RBP10.06□□□□□ -0.8
CLIP1-204ENST00000501271 TRMT5Q32P41 509 aaKnown RBP10.06□□□□□ -0.8
CLIP1-204ENST00000501271 ARL13BQ3SXY8 428 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 INTS6LQ5JSJ4 861 aaKnown RBP10.06□□□□□ -0.8
CLIP1-204ENST00000501271 TAC4Q86UU9 113 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 KBTBD2Q8IY47 623 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 TMEM86AQ8N2M4 240 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.06□□□□□ -0.8
CLIP1-204ENST00000501271 ZNF781Q8N8C0 355 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 ZSCAN18Q8TBC5 510 aaPredicted RBP10.06□□□□□ -0.8
CLIP1-204ENST00000501271 MYLPFQ96A32 169 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 FAM136AQ96C01 138 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 SMARCD1Q96GM5 515 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 RTP3Q9BQQ7 232 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 MCMBPQ9BTE3 642 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 KATNAL1Q9BW62 490 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 SHCBP1LQ9BZQ2 653 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 WDCPQ9H6R7 721 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 SLC38A7Q9NVC3 462 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 PTCH2Q9Y6C5 1203 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 CDY2AQ9Y6F7 541 aa10.06□□□□□ -0.8
CLIP1-204ENST00000501271 TDRD15B5MCY1 1934 aaKnown RBP10.05□□□□□ -0.8
CLIP1-204ENST00000501271 NLRC5Q86WI3 1866 aa10.05□□□□□ -0.8
CLIP1-204ENST00000501271 NYNRINQ9P2P1 1898 aaKnown RBP10.05□□□□□ -0.8
CLIP1-204ENST00000501271 PATJQ8NI35 1801 aa10.05□□□□□ -0.8
CLIP1-204ENST00000501271 IQCA1LA6NCM1 817 aa10.05□□□□□ -0.8
CLIP1-204ENST00000501271 MYADML2A6NDP7 307 aa10.05□□□□□ -0.8
CLIP1-204ENST00000501271 ERI2A8K979 691 aaKnown RBP10.05□□□□□ -0.8
CLIP1-204ENST00000501271 JCHAINP01591 159 aa10.05□□□□□ -0.8
CLIP1-204ENST00000501271 C2P06681 752 aa10.05□□□□□ -0.8
CLIP1-204ENST00000501271 THP07101 528 aa10.05□□□□□ -0.8
CLIP1-204ENST00000501271 NMBRP28336 390 aa10.05□□□□□ -0.8
CLIP1-204ENST00000501271 SCNN1GP51170 649 aa10.05□□□□□ -0.8
CLIP1-204ENST00000501271 PGGT1BP53609 377 aa10.05□□□□□ -0.8
CLIP1-204ENST00000501271 MRPS6P82932 125 aaKnown RBP10.05□□□□□ -0.8
CLIP1-204ENST00000501271 USP4Q13107 963 aa10.05□□□□□ -0.8
CLIP1-204ENST00000501271 MPP3Q13368 585 aa10.05□□□□□ -0.8
CLIP1-204ENST00000501271 IRF5Q13568 498 aa10.05□□□□□ -0.8
CLIP1-204ENST00000501271 FSCN1Q16658 493 aaKnown RBP10.05□□□□□ -0.8
CLIP1-204ENST00000501271 RALGPS1Q5JS13 557 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms