RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 TTC3P53804 2025 aa6.23□□□□□ -1.41
SF3B1-212ENST00000496458 NPIPB13A6NJU9 1138 aa6.22□□□□□ -1.41
SF3B1-212ENST00000496458 NPIPB5A8MRT5 1133 aa6.22□□□□□ -1.41
SF3B1-212ENST00000496458 NPIPB4C9JG80 1138 aa6.22□□□□□ -1.41
SF3B1-212ENST00000496458 IKBKBO14920 756 aa6.22□□□□□ -1.41
SF3B1-212ENST00000496458 HNRNPRO43390 633 aaKnown RBP6.22□□□□□ -1.41
SF3B1-212ENST00000496458 LYL1P12980 280 aa6.22□□□□□ -1.41
SF3B1-212ENST00000496458 PKMP14618 531 aaKnown RBP6.22□□□□□ -1.41
SF3B1-212ENST00000496458 KLRC2P26717 231 aa6.22□□□□□ -1.41
SF3B1-212ENST00000496458 OAZ1P54368 228 aa6.22□□□□□ -1.41
SF3B1-212ENST00000496458 SYT13Q7L8C5 426 aa6.22□□□□□ -1.41
SF3B1-212ENST00000496458 RNF144BQ7Z419 303 aa6.22□□□□□ -1.41
SF3B1-212ENST00000496458 DDX23Q9BUQ8 820 aaKnown RBP6.22□□□□□ -1.41
SF3B1-212ENST00000496458 CLPBQ9H078 707 aa6.22□□□□□ -1.41
SF3B1-212ENST00000496458 RBM38Q9H0Z9 239 aaKnown RBP6.22□□□□□ -1.41
SF3B1-212ENST00000496458 TAF1DQ9H5J8 278 aaPredicted RBP6.22□□□□□ -1.41
SF3B1-212ENST00000496458 PNRC2Q9NPJ4 139 aaKnown RBP6.22□□□□□ -1.41
SF3B1-212ENST00000496458 TBC1D14Q9P2M4 693 aa6.22□□□□□ -1.41
SF3B1-212ENST00000496458 FAM90A20PA6NIJ5 464 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 IPO5O00410 1097 aaKnown RBP6.21□□□□□ -1.42
SF3B1-212ENST00000496458 TNFRSF13BO14836 293 aaPredicted RBP6.21□□□□□ -1.42
SF3B1-212ENST00000496458 TYK2P29597 1187 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 CDC25AP30304 524 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 CHKAP35790 457 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 SLC16A2P36021 539 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 THBS3P49746 956 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 CYP2J2P51589 502 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 PRKAA2P54646 552 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 NANOS2P60321 138 aaKnown RBP6.21□□□□□ -1.42
SF3B1-212ENST00000496458 ALKBH1Q13686 389 aaKnown RBP6.21□□□□□ -1.42
SF3B1-212ENST00000496458 DCTN1Q14203 1278 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 GXYLT1Q4G148 440 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 FAM171A1Q5VUB5 890 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 MTFR2Q6P444 385 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 IGFN1Q86VF2 1251 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 ENAHQ8N8S7 591 aaPredicted RBP6.21□□□□□ -1.42
SF3B1-212ENST00000496458 Q9N2J8 555 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 SIRT3Q9NTG7 399 aaPredicted RBP6.21□□□□□ -1.42
SF3B1-212ENST00000496458 TMEM248Q9NWD8 314 aa6.21□□□□□ -1.42
SF3B1-212ENST00000496458 FAM90A8PA6NJQ4 464 aa6.2□□□□□ -1.42
SF3B1-212ENST00000496458 KRT38O76015 456 aa6.2□□□□□ -1.42
SF3B1-212ENST00000496458 FAM90A13PP0C7W8 464 aa6.2□□□□□ -1.42
SF3B1-212ENST00000496458 FAM90A24PP0C7X0 464 aa6.2□□□□□ -1.42
SF3B1-212ENST00000496458 VEGFAP15692 232 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-212ENST00000496458 GSTM2P28161 218 aa6.2□□□□□ -1.42
SF3B1-212ENST00000496458 TKTP29401 623 aaKnown RBP6.2□□□□□ -1.42
SF3B1-212ENST00000496458 OS9Q13438 667 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-212ENST00000496458 JMJD6Q6NYC1 403 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-212ENST00000496458 AAGABQ6PD74 315 aa6.2□□□□□ -1.42
SF3B1-212ENST00000496458 PARM1Q6UWI2 310 aa6.2□□□□□ -1.42
SF3B1-212ENST00000496458 SCN4BQ8IWT1 228 aa6.2□□□□□ -1.42
SF3B1-212ENST00000496458 PTGR2Q8N8N7 351 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-212ENST00000496458 CMASQ8NFW8 434 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-212ENST00000496458 CSGALNACT1Q8TDX6 532 aa6.2□□□□□ -1.42
SF3B1-212ENST00000496458 RUBCNQ92622 972 aa6.2□□□□□ -1.42
SF3B1-212ENST00000496458 GOLGA1Q92805 767 aa6.2□□□□□ -1.42
SF3B1-212ENST00000496458 ACTR5Q9H9F9 607 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-212ENST00000496458 SLC22A11Q9NSA0 550 aa6.2□□□□□ -1.42
SF3B1-212ENST00000496458 TMLHEQ9NVH6 421 aa6.2□□□□□ -1.42
SF3B1-212ENST00000496458 SRP68Q9UHB9 627 aaKnown RBP6.2□□□□□ -1.42
SF3B1-212ENST00000496458 IGKV2D-30A0A075B6S6 120 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 TRBV5-7A0A0A0MS05 114 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 KRTAP29-1A8MX34 341 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-212ENST00000496458 E7EVH7 732 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 KLKB1P03952 638 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 CHN1P15882 459 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 CST5P28325 142 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-212ENST00000496458 CDKN2AP42771 156 aaKnown RBP6.19□□□□□ -1.42
SF3B1-212ENST00000496458 SEMA3AQ14563 771 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 Q5PR19 223 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 WASHC2DQ5SRD0 308 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 C10orf62Q5T681 223 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-212ENST00000496458 CTU1Q7Z7A3 348 aaKnown RBP6.19□□□□□ -1.42
SF3B1-212ENST00000496458 DPP10Q8N608 796 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 MYCT1Q8N699 235 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 FSIP1Q8NA03 581 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 OR6Y1Q8NGX8 325 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 C2CD4CQ8TF44 421 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 LYZL4Q96KX0 146 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 MARK4Q96L34 752 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 ISCUQ9H1K1 167 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 ACAD9Q9H845 621 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 RNF146Q9NTX7 359 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 INSL5Q9Y5Q6 135 aa6.19□□□□□ -1.42
SF3B1-212ENST00000496458 RPS10-NUDT3A0A1W2PQS6 291 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 GAGE12JA6NER3 117 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 SYN3O14994 580 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 ACP5P13686 325 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 CCKARP32238 428 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 TRAPPC10P48553 1259 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 RBM5P52756 815 aaKnown RBP eCLIP6.18□□□□□ -1.42
SF3B1-212ENST00000496458 PGGT1BP53609 377 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 SMAD1Q15797 465 aaKnown RBP6.18□□□□□ -1.42
SF3B1-212ENST00000496458 C5orf22Q49AR2 442 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 FAM217AQ8IXS0 508 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 FAM185AQ8N0U4 392 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 LRRC57Q8N9N7 239 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 C7orf57Q8NEG2 295 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 HIPK3Q9H422 1215 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 PLEKHA2Q9HB19 425 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms