RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 SLC35F5Q8WV83 523 aa13.73□□□□□ -0.21
GPC1-209ENST00000495100 RCN3Q96D15 328 aa13.73□□□□□ -0.21
GPC1-209ENST00000495100 ERLEC1Q96DZ1 483 aa13.73□□□□□ -0.21
GPC1-209ENST00000495100 FCRL3Q96P31 734 aaPredicted RBP13.73□□□□□ -0.21
GPC1-209ENST00000495100 PANX3Q96QZ0 392 aa13.73□□□□□ -0.21
GPC1-209ENST00000495100 SLC39A3Q9BRY0 314 aa13.73□□□□□ -0.21
GPC1-209ENST00000495100 TINF2Q9BSI4 451 aa13.73□□□□□ -0.21
GPC1-209ENST00000495100 VCX3BQ9H321 246 aa13.73□□□□□ -0.21
GPC1-209ENST00000495100 MROH8Q9H579 483 aa13.73□□□□□ -0.21
GPC1-209ENST00000495100 PCDHA11Q9Y5I1 949 aa13.73□□□□□ -0.21
GPC1-209ENST00000495100 TLL2Q9Y6L7 1015 aa13.73□□□□□ -0.21
GPC1-209ENST00000495100 A0A0U1RQS6 177 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 ERI2A8K979 691 aaKnown RBP13.72□□□□□ -0.21
GPC1-209ENST00000495100 MAP3K13O43283 966 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 GAS2O43903 313 aaKnown RBP13.72□□□□□ -0.21
GPC1-209ENST00000495100 GABBR2O75899 941 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 TBX18O95935 607 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 NPR3P17342 541 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 PMLP29590 882 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 GP5P40197 560 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 MED21Q13503 144 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 TDRPQ86YL5 185 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 URGCPQ8TCY9 931 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 C12orf42Q96LP6 360 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 EBF3Q9H4W6 596 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 TCRBV5S1A1TA0A578 114 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 NT5C1B-RDH14C9J2C7 533 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 ABLIM1O14639 778 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 SPAG6O75602 509 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 MATKP42679 507 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 OR1G1P47890 313 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 GRIA4P48058 902 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 MAP3K10Q02779 954 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 EFEMP1Q12805 493 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 DDR2Q16832 855 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 ESRP1Q6NXG1 681 aaKnown RBP13.72□□□□□ -0.21
GPC1-209ENST00000495100 FRMD7Q6ZUT3 714 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 OR52K2Q8NGK3 314 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 PCED1BQ96HM7 432 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 VPS39Q96JC1 886 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 ZNF184Q99676 751 aaPredicted RBP13.72□□□□□ -0.21
GPC1-209ENST00000495100 YY1AP1Q9H869 796 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 XPR1Q9UBH6 696 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 COL24A1Q17RW2 1714 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 RREB1Q92766 1687 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 TNPO2O14787 897 aaKnown RBP13.72□□□□□ -0.21
GPC1-209ENST00000495100 STAMBPO95630 424 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 IL1RL1Q01638 556 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 DSG1Q02413 1049 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 TAF12Q16514 161 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 CDCA2Q69YH5 1023 aaPredicted RBP13.72□□□□□ -0.21
GPC1-209ENST00000495100 FNIP1Q8TF40 1166 aa13.72□□□□□ -0.21
GPC1-209ENST00000495100 SKA2Q8WVK7 121 aaPredicted RBP13.72□□□□□ -0.21
GPC1-209ENST00000495100 POLR2AP24928 1970 aaKnown RBP13.71□□□□□ -0.21
GPC1-209ENST00000495100 ATP8B3O60423 1300 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 PLIN3O60664 434 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 LRIG2O94898 1065 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 SERPINE1P05121 402 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 HUNKP57058 714 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 SNX17Q15036 470 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 TMC7Q7Z402 723 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 NIPA2Q8N8Q9 360 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 WNT8BQ93098 351 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 ABTB1Q969K4 478 aaPredicted RBP13.71□□□□□ -0.21
GPC1-209ENST00000495100 TMEM209Q96SK2 561 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 ZNF670Q9BS34 389 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 TUBB6Q9BUF5 446 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 LRRC40Q9H9A6 602 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 THEGQ9P2T0 379 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 ZNF112Q9UJU3 913 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 MMP3P08254 477 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 ATP6V1C1P21283 382 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 HOXA11P31270 313 aaPredicted RBP13.71□□□□□ -0.21
GPC1-209ENST00000495100 SERPINB9P50453 376 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 ABCE1P61221 599 aaKnown RBP13.71□□□□□ -0.21
GPC1-209ENST00000495100 MFSD10Q14728 455 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 SV2CQ496J9 727 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 ARL13AQ5H913 290 aaPredicted RBP13.71□□□□□ -0.21
GPC1-209ENST00000495100 WASHC2DQ5SRD0 308 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 SLC30A9Q6PML9 568 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 ACAD11Q709F0 780 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 AMIGO2Q86SJ2 522 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 NXNL1Q96CM4 212 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 SEPT5Q99719 369 aaPredicted RBP13.71□□□□□ -0.21
GPC1-209ENST00000495100 ILKAPQ9H0C8 392 aaPredicted RBP13.71□□□□□ -0.21
GPC1-209ENST00000495100 SLC27A5Q9Y2P5 690 aa13.71□□□□□ -0.21
GPC1-209ENST00000495100 IGKV6D-21A0A0A0MT36 114 aa13.7□□□□□ -0.22
GPC1-209ENST00000495100 LMNAP02545 664 aaKnown RBP13.7□□□□□ -0.22
GPC1-209ENST00000495100 CES1P23141 567 aa13.7□□□□□ -0.22
GPC1-209ENST00000495100 CLEC6AQ6EIG7 209 aa13.7□□□□□ -0.22
GPC1-209ENST00000495100 NT5DC4Q86YG4 428 aa13.7□□□□□ -0.22
GPC1-209ENST00000495100 KBTBD2Q8IY47 623 aa13.7□□□□□ -0.22
GPC1-209ENST00000495100 NPLOC4Q8TAT6 608 aa13.7□□□□□ -0.22
GPC1-209ENST00000495100 RMDN1Q96DB5 314 aa13.7□□□□□ -0.22
GPC1-209ENST00000495100 RPL10LQ96L21 214 aaKnown RBP13.7□□□□□ -0.22
GPC1-209ENST00000495100 ACE2Q9BYF1 805 aaPredicted RBP13.7□□□□□ -0.22
GPC1-209ENST00000495100 SAR1AQ9NR31 198 aa13.7□□□□□ -0.22
GPC1-209ENST00000495100 PAPOLBQ9NRJ5 636 aaKnown RBP13.7□□□□□ -0.22
GPC1-209ENST00000495100 KCNK4Q9NYG8 393 aa13.7□□□□□ -0.22
GPC1-209ENST00000495100 GJD2Q9UKL4 321 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms