RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 OSBPL5Q9H0X9 879 aaPredicted RBP4.28□□□□□ -1.72
VPS50-219ENST00000495039 SDF2L1Q9HCN8 221 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 ZNF304Q9HCX3 659 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 IL36RNQ9UBH0 155 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 TRBV5-7A0A0A0MS05 114 aa4.27□□□□□ -1.73
VPS50-219ENST00000495039 C3orf70A6NLC5 250 aaPredicted RBP4.27□□□□□ -1.73
VPS50-219ENST00000495039 STMND1H3BQB6 276 aa4.27□□□□□ -1.73
VPS50-219ENST00000495039 SRGAP2BP0DMP2 458 aa4.27□□□□□ -1.73
VPS50-219ENST00000495039 PECAM1P16284 738 aaPredicted RBP4.27□□□□□ -1.73
VPS50-219ENST00000495039 EGR1P18146 543 aa4.27□□□□□ -1.73
VPS50-219ENST00000495039 AMTP48728 403 aa4.27□□□□□ -1.73
VPS50-219ENST00000495039 NUDT6P53370 316 aa4.27□□□□□ -1.73
VPS50-219ENST00000495039 ACSM2AQ08AH3 577 aa4.27□□□□□ -1.73
VPS50-219ENST00000495039 AAGABQ6PD74 315 aa4.27□□□□□ -1.73
VPS50-219ENST00000495039 BEND5Q7L4P6 421 aa4.27□□□□□ -1.73
VPS50-219ENST00000495039 MDGA2Q7Z553 956 aa4.27□□□□□ -1.73
VPS50-219ENST00000495039 KLBQ86Z14 1044 aa4.27□□□□□ -1.73
VPS50-219ENST00000495039 SLC22A17Q8WUG5 538 aa4.27□□□□□ -1.73
VPS50-219ENST00000495039 FBXO4Q9UKT5 387 aa4.27□□□□□ -1.73
VPS50-219ENST00000495039 CORO2BQ9UQ03 480 aa4.27□□□□□ -1.73
VPS50-219ENST00000495039 NKX2-8O15522 239 aa4.26□□□□□ -1.73
VPS50-219ENST00000495039 DHHO43323 396 aa4.26□□□□□ -1.73
VPS50-219ENST00000495039 ITGA5P08648 1049 aa4.26□□□□□ -1.73
VPS50-219ENST00000495039 FGFR2P21802 821 aa4.26□□□□□ -1.73
VPS50-219ENST00000495039 TLE3Q04726 772 aa4.26□□□□□ -1.73
VPS50-219ENST00000495039 GRSF1Q12849 480 aaKnown RBP eCLIP4.26□□□□□ -1.73
VPS50-219ENST00000495039 TRAF3Q13114 568 aa4.26□□□□□ -1.73
VPS50-219ENST00000495039 HLTFQ14527 1009 aaKnown RBP eCLIP4.26□□□□□ -1.73
VPS50-219ENST00000495039 LRRC57Q8N9N7 239 aa4.26□□□□□ -1.73
VPS50-219ENST00000495039 TTC17Q96AE7 1141 aa4.26□□□□□ -1.73
VPS50-219ENST00000495039 TIFAQ96CG3 184 aa4.26□□□□□ -1.73
VPS50-219ENST00000495039 PCGF6Q9BYE7 350 aa4.26□□□□□ -1.73
VPS50-219ENST00000495039 KLHL31Q9H511 634 aa4.26□□□□□ -1.73
VPS50-219ENST00000495039 OCIAD1Q9NX40 245 aa4.26□□□□□ -1.73
VPS50-219ENST00000495039 DONSONQ9NYP3 566 aa4.26□□□□□ -1.73
VPS50-219ENST00000495039 PCDHGB6Q9Y5F9 930 aa4.26□□□□□ -1.73
VPS50-219ENST00000495039 KIF26BQ2KJY2 2108 aa4.25□□□□□ -1.73
VPS50-219ENST00000495039 MCIDASD6RGH6 385 aa4.25□□□□□ -1.73
VPS50-219ENST00000495039 PRC1O43663 620 aa4.25□□□□□ -1.73
VPS50-219ENST00000495039 CAND2O75155 1236 aa4.25□□□□□ -1.73
VPS50-219ENST00000495039 GM2AP17900 193 aa4.25□□□□□ -1.73
VPS50-219ENST00000495039 GNLYP22749 145 aa4.25□□□□□ -1.73
VPS50-219ENST00000495039 TAS2R50P59544 299 aa4.25□□□□□ -1.73
VPS50-219ENST00000495039 ARL13AQ5H913 290 aaPredicted RBP4.25□□□□□ -1.73
VPS50-219ENST00000495039 KLHDC7AQ5VTJ3 777 aa4.25□□□□□ -1.73
VPS50-219ENST00000495039 CCAR1Q8IX12 1150 aaKnown RBP4.25□□□□□ -1.73
VPS50-219ENST00000495039 CMASQ8NFW8 434 aaPredicted RBP4.25□□□□□ -1.73
VPS50-219ENST00000495039 TAF15Q92804 592 aaKnown RBP eCLIP4.25□□□□□ -1.73
VPS50-219ENST00000495039 EPYCQ99645 322 aa4.25□□□□□ -1.73
VPS50-219ENST00000495039 IL25Q9H293 177 aa4.25□□□□□ -1.73
VPS50-219ENST00000495039 LINC01553A4QN01 128 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 ERI2A8K979 691 aaKnown RBP4.24□□□□□ -1.73
VPS50-219ENST00000495039 RHPN2P1A8MT19 583 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 J3KTA2 159 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 SOX30O94993 753 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 KRT18P05783 430 aaKnown RBP4.24□□□□□ -1.73
VPS50-219ENST00000495039 GABRB3P28472 473 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 AVPR1AP37288 418 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 GNALP38405 381 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 TAF6P49848 677 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 ADPRHP54922 357 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 ILF3Q12906 894 aaKnown RBP eCLIP4.24□□□□□ -1.73
VPS50-219ENST00000495039 AAK1Q2M2I8 961 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 PMS2CLQ68D20 193 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 ANKRD40Q6AI12 368 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 NOL8Q76FK4 1167 aaKnown RBP4.24□□□□□ -1.73
VPS50-219ENST00000495039 RASGRP3Q8IV61 690 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 DCUN1D3Q8IWE4 304 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 LMNTD1Q8N9Z9 388 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 LILRB1Q8NHL6 650 aaPredicted RBP4.24□□□□□ -1.73
VPS50-219ENST00000495039 APOL5Q9BWW9 433 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 ACTR5Q9H9F9 607 aaPredicted RBP4.24□□□□□ -1.73
VPS50-219ENST00000495039 FSCN3Q9NQT6 498 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 MYO1AQ9UBC5 1043 aa4.24□□□□□ -1.73
VPS50-219ENST00000495039 PNMA6EA0A0J9YXQ4 647 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 LDB2O43679 373 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 NAGAP17050 411 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 KLRC2P26717 231 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 TBX4P57082 545 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 TMPRSS3P57727 454 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 CCDC6Q16204 474 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 MAPKAPK3Q16644 382 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 ZNF284Q2VY69 593 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 COBLL1Q53SF7 1204 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 EFHC1Q5JVL4 640 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 HEPHL1Q6MZM0 1159 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 TMEM71Q6P5X7 295 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 KSR2Q6VAB6 950 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 CCDC33Q8N5R6 958 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 ADGRG7Q96K78 797 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 DOCK7Q96N67 2140 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 SORBS1Q9BX66 1292 aaKnown RBP4.23□□□□□ -1.73
VPS50-219ENST00000495039 RAP2CQ9Y3L5 183 aa4.23□□□□□ -1.73
VPS50-219ENST00000495039 SRPRBQ9Y5M8 271 aaKnown RBP4.23□□□□□ -1.73
VPS50-219ENST00000495039 POM121BA6NF01 834 aa4.22□□□□□ -1.73
VPS50-219ENST00000495039 TAF5LO75529 589 aa4.22□□□□□ -1.73
VPS50-219ENST00000495039 SERPINI2O75830 405 aa4.22□□□□□ -1.73
VPS50-219ENST00000495039 MYZAPP0CAP1 466 aa4.22□□□□□ -1.73
VPS50-219ENST00000495039 GLIPR1P48060 266 aa4.22□□□□□ -1.73
VPS50-219ENST00000495039 PPP3CCP48454 512 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms