RNA–Protein interactions for RNA: ENST00000493957.5

UBA3-211, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 3

Gene UBA3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-211	ENST00000493957	TTC34	A8MYJ7	566 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	CREB3	O43889	395 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	SNAP91	O60641	907 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	CLDN11	O75508	207 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	EPHX1	P07099	455 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	RHOC	P08134	193 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	H2AFZ	P0C0S5	128 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	VAV1	P15498	845 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	NDUFV2	P19404	249 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	BCKDHB	P21953	392 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	GLDC	P23378	1020 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	PLK1	P53350	603 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	NRL	P54845	237 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	NRG1	Q02297	640 aa	Predicted RBP	11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	SEMA3B	Q13214	749 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	EFHC2	Q5JST6	749 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	RWDD4	Q6NW29	188 aa	Known RBP	11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	LRRC31	Q6UY01	552 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	H2AFV	Q71UI9	128 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	NLRP14	Q86W24	1093 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	CCDC117	Q8IWD4	279 aa	Predicted RBP	11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	FAM160A2	Q8N612	972 aa	Predicted RBP	11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	SUMF1	Q8NBK3	374 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	ZNF564	Q8TBZ8	553 aa	Predicted RBP	11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	TBC1D31	Q96DN5	1066 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	FAM122A	Q96E09	287 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	KCTD15	Q96SI1	283 aa	Predicted RBP	11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	FEM1A	Q9BSK4	669 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	ZYG11B	Q9C0D3	744 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	MKRN2	Q9H000	416 aa	Known RBP	11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	POLM	Q9NP87	494 aa	Predicted RBP	11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	OSGEP	Q9NPF4	335 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	RYDEN	Q9NUL5	291 aa	Known RBP	11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	PPARGC1A	Q9UBK2	798 aa	Known RBP	11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	EBF1	Q9UH73	591 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	SLCO3A1	Q9UIG8	710 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	AP4E1	Q9UPM8	1137 aa		11.97	□□□□□ -0.49
UBA3-211	ENST00000493957	GVINP1	Q7Z2Y8	2422 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	PTPRZ1	P23471	2315 aa	Predicted RBP	11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	SOWAHD	A6NJG2	315 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	PROB1	E7EW31	1015 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	TIMM44	O43615	452 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	ATP5B	P06576	529 aa	Known RBP	11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	TMEM253	P0C7T8	217 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	FECH	P22830	423 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	CDC25B	P30305	580 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	OR1E1	P30953	314 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	L1CAM	P32004	1257 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	ACVRL1	P37023	503 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	COPA	P53621	1224 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	SMTNL2	Q2TAL5	461 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	SDE2	Q6IQ49	451 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	ZC3H14	Q6PJT7	736 aa	Known RBP	11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	PRR23B	Q6ZRT6	265 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	PGBD3	Q8N328	593 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	ZNF557	Q8N988	423 aa	Predicted RBP	11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	NETO2	Q8NC67	525 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	MRGPRX1	Q96LB2	322 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	PANX2	Q96RD6	677 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	MUC3B	Q9H195	1237 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	DHX35	Q9H5Z1	703 aa	Known RBP	11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	NOL6	Q9H6R4	1146 aa	Known RBP	11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	ZWILCH	Q9H900	591 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	TMEM51	Q9NW97	253 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	BCCIP	Q9P287	314 aa	Known RBP eCLIP	11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	CTTNBP2NL	Q9P2B4	639 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	DNAI1	Q9UI46	699 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	VPS28	Q9UK41	221 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	USP18	Q9UMW8	372 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	ACTL7A	Q9Y615	435 aa		11.96	□□□□□ -0.49
UBA3-211	ENST00000493957	PLXNA2	O75051	1894 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	CCDC163	A0A0D9SF12	145 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	PRR23A	A6NEV1	266 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	TMEM110-MUSTN1	A8MSY1	372 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957		K7ERQ8	282 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	PRPSAP2	O60256	369 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	SIN3B	O75182	1162 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	RPP40	O75818	363 aa	Known RBP	11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	RNF8	O76064	485 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	MOCS3	O95396	460 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	MT-CO1	P00395	513 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	ASL	P04424	464 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	RHOQ	P17081	205 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	EPHB2	P29323	1055 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	ECT2L	Q008S8	904 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	SLC25A11	Q02978	314 aa	Known RBP	11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	CAMK2G	Q13555	558 aa	Predicted RBP	11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	SLC12A1	Q13621	1099 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	SIM2	Q14190	667 aa	Predicted RBP	11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	STARD3	Q14849	445 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	KCNT1	Q5JUK3	1230 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	ERMARD	Q5T6L9	678 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	KIAA1324	Q6UXG2	1013 aa	Known RBP	11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	LINGO4	Q6UY18	593 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	RAD9B	Q6WBX8	426 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	SETD3	Q86TU7	594 aa	Predicted RBP	11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	KBTBD6	Q86V97	674 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	TMEM139	Q8IV31	216 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	NIPA2	Q8N8Q9	360 aa		11.95	□□□□□ -0.5
UBA3-211	ENST00000493957	GAB3	Q8WWW8	586 aa		11.95	□□□□□ -0.5

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