RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 LAMTOR5O43504 91 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 HBP1O60381 514 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 SCG2P13521 617 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 GSTM2P28161 218 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 FMO4P31512 558 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 SLC8A1P32418 973 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 EPHB4P54760 987 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 SHC2P98077 582 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 ITIH3Q06033 890 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 RESTQ13127 1097 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 GSTA3Q16772 222 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 DPCR1Q3MIW9 517 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 FBXO43Q4G163 708 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 KYAT3Q6YP21 454 aaKnown RBP4.96□□□□□ -1.62
VPS13A-212ENST00000493341 PTCHD4Q6ZW05 846 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 ARHGAP12Q8IWW6 846 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 FAM149B1Q96BN6 582 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 BOD1Q96IK1 185 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 TEX12Q9BXU0 123 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 EDEM3Q9BZQ6 932 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 FBRSL1Q9HCM7 1045 aaKnown RBP4.96□□□□□ -1.62
VPS13A-212ENST00000493341 INTS6Q9UL03 887 aaKnown RBP4.96□□□□□ -1.62
VPS13A-212ENST00000493341 SLC30A1Q9Y6M5 507 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 CAPN7Q9Y6W3 813 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 ALDOCP09972 364 aaKnown RBP4.95□□□□□ -1.62
VPS13A-212ENST00000493341 MED14OSP0DP75 135 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 CDH2P19022 906 aaPredicted RBP4.95□□□□□ -1.62
VPS13A-212ENST00000493341 MSH2P43246 934 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 HSD17B4P51659 736 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 SLC37A1P57057 533 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 AIMP2Q13155 320 aaKnown RBP4.95□□□□□ -1.62
VPS13A-212ENST00000493341 CRHR2Q13324 411 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 COG2Q14746 738 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 ZNF362Q5T0B9 420 aaPredicted RBP4.95□□□□□ -1.62
VPS13A-212ENST00000493341 GJB7Q6PEY0 223 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 GALNT7Q86SF2 657 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 OR8H3Q8N146 312 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 GHDCQ8N2G8 530 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 CPXM2Q8N436 756 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 ARL10Q8N8L6 244 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 POMGNT2Q8NAT1 580 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 HSPH1Q92598 858 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 ZKSCAN4Q969J2 545 aaPredicted RBP4.95□□□□□ -1.62
VPS13A-212ENST00000493341 SLC22A18Q96BI1 424 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 PTCD3Q96EY7 689 aaKnown RBP4.95□□□□□ -1.62
VPS13A-212ENST00000493341 GCNAQ96QF7 691 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 SLC22A11Q9NSA0 550 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 ABHD10Q9NUJ1 306 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 BABAM1Q9NWV8 329 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 DKK3Q9UBP4 350 aa4.95□□□□□ -1.62
VPS13A-212ENST00000493341 ZNF536O15090 1300 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 TRIM64A6NGJ6 449 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 TRIM64BA6NI03 449 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 DSCR3O14972 297 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 FOXS1O43638 330 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 LIASO43766 372 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 C1RP00736 705 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 RB1P06400 928 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 PKMP14618 531 aaKnown RBP4.94□□□□□ -1.62
VPS13A-212ENST00000493341 IGFBP2P18065 325 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 EEF1DP29692 281 aaKnown RBP4.94□□□□□ -1.62
VPS13A-212ENST00000493341 CAPZA2P47755 286 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 SCNN1GP51170 649 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 FAM189BP81408 668 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 TNFAIP1Q13829 316 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 NTRK2Q16620 822 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 ZNF618Q5T7W0 954 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 SARM1Q6SZW1 724 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 HTR3DQ70Z44 454 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 TMEM200AQ86VY9 491 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 POGLUT1Q8NBL1 392 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 MSANTD4Q8NCY6 345 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 DNAAF1Q8NEP3 725 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 ZNF653Q96CK0 615 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 GPATCH1Q9BRR8 931 aaKnown RBP4.94□□□□□ -1.62
VPS13A-212ENST00000493341 SNX15Q9NRS6 342 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 C20orf141Q9NUB4 165 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 C5AR2Q9P296 337 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 CDH22Q9UJ99 828 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 AMFRQ9UKV5 643 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 FRMD4BQ9Y2L6 1034 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 PTRH2Q9Y3E5 179 aaKnown RBP4.94□□□□□ -1.62
VPS13A-212ENST00000493341 SESN1Q9Y6P5 492 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 SUV39H1O43463 412 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 CDKL5O76039 1030 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 GGPS1O95749 300 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 MBPP02686 304 aaPredicted RBP4.94□□□□□ -1.62
VPS13A-212ENST00000493341 POU1F1P28069 291 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 DUSP1P28562 367 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 CTGFP29279 349 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 GJC1P36383 396 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 PTPN9P43378 593 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 NRIP1P48552 1158 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 DIO1P49895 249 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 GPC5P78333 572 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 TCP11X2Q5H9J9 407 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 TEDDM1Q5T9Z0 273 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 TSSK4Q6SA08 328 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 USP51Q70EK9 711 aa4.94□□□□□ -1.62
VPS13A-212ENST00000493341 POLNQ7Z5Q5 900 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms