RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 TBC1D3Q8IZP1 549 aaPredicted RBP12.77□□□□□ -0.37
CPSF3-204ENST00000489403 DEFB106AQ8N104 65 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 WDTC1Q8N5D0 677 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 EID2Q8N6I1 236 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 ALG14Q96F25 216 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 LRIG1Q96JA1 1093 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 CPXM1Q96SM3 734 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 CRACR2AQ9BSW2 395 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 FAM204AQ9H8W3 233 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 DDIT4Q9NX09 232 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 COX16Q9P0S2 106 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 ARHGAP20Q9P2F6 1191 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 SLC12A6Q9UHW9 1150 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 SARDHQ9UL12 918 aa12.77□□□□□ -0.37
CPSF3-204ENST00000489403 ANKRD11Q6UB99 2663 aaPredicted RBP12.76□□□□□ -0.37
CPSF3-204ENST00000489403 ITPR1Q14643 2758 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 DOCK9Q9BZ29 2069 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 GOLGA4Q13439 2230 aaKnown RBP12.76□□□□□ -0.37
CPSF3-204ENST00000489403 A0A087WV48 116 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 E9PAM4 449 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 TLR4O00206 839 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 SLC7A4O43246 635 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 PLRG1O43660 514 aaKnown RBP12.76□□□□□ -0.37
CPSF3-204ENST00000489403 RTN2O75298 545 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 GRAP2O75791 330 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 GLI1P08151 1106 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 SLC2A3P11169 496 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 SLC9A1P19634 815 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 CCR1P32246 355 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 GGCXP38435 758 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 ARRB1P49407 418 aaPredicted RBP12.76□□□□□ -0.37
CPSF3-204ENST00000489403 ACADVLP49748 655 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 VASPP50552 380 aaPredicted RBP12.76□□□□□ -0.37
CPSF3-204ENST00000489403 IRAK1P51617 712 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 CDK17Q00537 523 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 APBA1Q02410 837 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 BNIP3Q12983 259 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 ARHGAP44Q17R89 818 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 SLC45A4Q5BKX6 768 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 NAPEPLDQ6IQ20 393 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 FAM183BPQ6ZVS7 135 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 SPATS2Q86XZ4 545 aaKnown RBP12.76□□□□□ -0.37
CPSF3-204ENST00000489403 PASD1Q8IV76 773 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 MFSD2AQ8NA29 543 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 OR8D1Q8WZ84 308 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 TSC1Q92574 1164 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 RNF34Q969K3 372 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 RPRD1AQ96P16 312 aaPredicted RBP12.76□□□□□ -0.37
CPSF3-204ENST00000489403 KDM4CQ9H3R0 1056 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 ASNSD1Q9NWL6 643 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 HS3ST4Q9Y661 456 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 BAHCC1Q9P281 2608 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 APC2O95996 2303 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 ACACAQ13085 2346 aa12.76□□□□□ -0.37
CPSF3-204ENST00000489403 ATP9BO43861 1147 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 HSF2BPO75031 334 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 MAT2AP31153 395 aaKnown RBP12.75□□□□□ -0.37
CPSF3-204ENST00000489403 USP8P40818 1118 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 RXRGP48443 463 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 OXCT1P55809 520 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 AUHQ13825 339 aaKnown RBP12.75□□□□□ -0.37
CPSF3-204ENST00000489403 POM121L1PQ3SYA9 428 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 ACCSLQ4AC99 568 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 EFHC1Q5JVL4 640 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 AGBL4Q5VU57 503 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 SFMBT2Q5VUG0 894 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 OLFML1Q6UWY5 402 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 Q6ZVU0 165 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 KANSL1Q7Z3B3 1105 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 PRPF39Q86UA1 669 aaKnown RBP12.75□□□□□ -0.37
CPSF3-204ENST00000489403 TRIM69Q86WT6 500 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 OXR1Q8N573 874 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 C1orf131Q8NDD1 294 aaKnown RBP12.75□□□□□ -0.37
CPSF3-204ENST00000489403 CRELD1Q96HD1 420 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 PPP1R13BQ96KQ4 1090 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 FAM81BQ96LP2 452 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 BBC3Q96PG8 261 aaPredicted RBP12.75□□□□□ -0.37
CPSF3-204ENST00000489403 ERVMER34-1Q9H9K5 563 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 SLC25A13Q9UJS0 675 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 VANGL2Q9ULK5 521 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 PCDHGC3Q9UN70 934 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 OR51B4Q9Y5P0 310 aa12.75□□□□□ -0.37
CPSF3-204ENST00000489403 MYLKQ15746 1914 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 C1QTNF3-AMACRE9PGA6 284 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 ALOX15BO15296 676 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 GADD45BO75293 160 aaPredicted RBP12.74□□□□□ -0.37
CPSF3-204ENST00000489403 DAB1O75553 588 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 FGFR1OPO95684 399 aaKnown RBP12.74□□□□□ -0.37
CPSF3-204ENST00000489403 ERBB2P04626 1255 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 C1SP09871 688 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 JUPP14923 745 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 HNF1BP35680 557 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 CNTN1Q12860 1018 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 NME3Q13232 169 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 DLG2Q15700 870 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 PTPN20Q4JDL3 420 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 HES3Q5TGS1 186 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 OTUD1Q5VV17 481 aaPredicted RBP12.74□□□□□ -0.37
CPSF3-204ENST00000489403 FAM46CQ5VWP2 391 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 OR6B2Q6IFH4 312 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms