RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 SCML1Q9UN30 329 aa21■□□□□ 0.95
HDAC4-209ENST00000487617 NCKAP1Q9Y2A7 1128 aa21■□□□□ 0.95
HDAC4-209ENST00000487617 OR51B4Q9Y5P0 310 aa21■□□□□ 0.95
HDAC4-209ENST00000487617 IGLV3-10A0A075B6K4 115 aa20.99■□□□□ 0.95
HDAC4-209ENST00000487617 SIGLEC16A6NMB1 481 aa20.99■□□□□ 0.95
HDAC4-209ENST00000487617 GPD1P21695 349 aa20.99■□□□□ 0.95
HDAC4-209ENST00000487617 CST6Q15828 149 aa20.99■□□□□ 0.95
HDAC4-209ENST00000487617 ACCSLQ4AC99 568 aa20.99■□□□□ 0.95
HDAC4-209ENST00000487617 WDR59Q6PJI9 974 aa20.99■□□□□ 0.95
HDAC4-209ENST00000487617 STRADAQ7RTN6 431 aa20.99■□□□□ 0.95
HDAC4-209ENST00000487617 SETD3Q86TU7 594 aaPredicted RBP20.99■□□□□ 0.95
HDAC4-209ENST00000487617 FAM172AQ8WUF8 416 aa20.99■□□□□ 0.95
HDAC4-209ENST00000487617 DNASE2BQ8WZ79 361 aa20.99■□□□□ 0.95
HDAC4-209ENST00000487617 FAM129BQ96TA1 746 aa20.99■□□□□ 0.95
HDAC4-209ENST00000487617 MIR1-1HGQ9H1L0 117 aa20.99■□□□□ 0.95
HDAC4-209ENST00000487617 PCED1AQ9H1Q7 454 aa20.99■□□□□ 0.95
HDAC4-209ENST00000487617 CAPN10Q9HC96 672 aa20.99■□□□□ 0.95
HDAC4-209ENST00000487617 FBXL12Q9NXK8 326 aa20.99■□□□□ 0.95
HDAC4-209ENST00000487617 TNRC6BQ9UPQ9 1833 aaKnown RBP20.99■□□□□ 0.95
HDAC4-209ENST00000487617 CACNA1AO00555 2505 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 GOLGA6L19H0YKK7 550 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 MID1O15344 667 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 SEMA4FO95754 770 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 VAV1P15498 845 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 OR1E1P30953 314 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 ADRA1BP35368 520 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 ATXN3P54252 364 aaPredicted RBP20.98■□□□□ 0.95
HDAC4-209ENST00000487617 KRT83P78385 493 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 FANCCQ00597 558 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 SFSWAPQ12872 951 aaKnown RBP20.98■□□□□ 0.95
HDAC4-209ENST00000487617 UAP1L1Q3KQV9 507 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 C6orf118Q5T5N4 469 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 SFMBT2Q5VUG0 894 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 USP30Q70CQ3 517 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 MCOLN2Q8IZK6 566 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 FRS2Q8WU20 508 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 SNX19Q92543 992 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 CENPIQ92674 756 aaPredicted RBP20.98■□□□□ 0.95
HDAC4-209ENST00000487617 SYT11Q9BT88 431 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 GTPBP2Q9BX10 602 aaKnown RBP20.98■□□□□ 0.95
HDAC4-209ENST00000487617 ZYG11BQ9C0D3 744 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 C6orf106Q9H6K1 298 aaPredicted RBP20.98■□□□□ 0.95
HDAC4-209ENST00000487617 SGK2Q9HBY8 427 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 TAS2R14Q9NYV8 317 aa20.98■□□□□ 0.95
HDAC4-209ENST00000487617 ANKRD62A6NC57 917 aa20.97■□□□□ 0.95
HDAC4-209ENST00000487617 ATP9BO43861 1147 aa20.97■□□□□ 0.95
HDAC4-209ENST00000487617 SLC8A1P32418 973 aa20.97■□□□□ 0.95
HDAC4-209ENST00000487617 PSMD8P48556 350 aa20.97■□□□□ 0.95
HDAC4-209ENST00000487617 VASPP50552 380 aaPredicted RBP20.97■□□□□ 0.95
HDAC4-209ENST00000487617 HDAC4P56524 1084 aa20.97■□□□□ 0.95
HDAC4-209ENST00000487617 ELAVL3Q14576 367 aaKnown RBP20.97■□□□□ 0.95
HDAC4-209ENST00000487617 ZSCAN23Q3MJ62 389 aa20.97■□□□□ 0.95
HDAC4-209ENST00000487617 ARTNQ5T4W7 220 aa20.97■□□□□ 0.95
HDAC4-209ENST00000487617 ZCCHC9Q8N567 271 aaKnown RBP20.97■□□□□ 0.95
HDAC4-209ENST00000487617 MCEEQ96PE7 176 aa20.97■□□□□ 0.95
HDAC4-209ENST00000487617 PSMB7Q99436 277 aa20.97■□□□□ 0.95
HDAC4-209ENST00000487617 OMDQ99983 421 aa20.97■□□□□ 0.95
HDAC4-209ENST00000487617 C2orf49Q9BVC5 232 aaPredicted RBP20.97■□□□□ 0.95
HDAC4-209ENST00000487617 HAUS4Q9H6D7 363 aa20.97■□□□□ 0.95
HDAC4-209ENST00000487617 AIPL1Q9NZN9 384 aa20.97■□□□□ 0.95
HDAC4-209ENST00000487617 OR12D3Q9UGF7 316 aa20.97■□□□□ 0.95
HDAC4-209ENST00000487617 EIF2B4Q9UI10 523 aaKnown RBP20.97■□□□□ 0.95
HDAC4-209ENST00000487617 A0A0D9SEW6 157 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 A0A1B0GTW7 788 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 A0A1W2PP55 124 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 TCRBV5S1A1TA0A578 114 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 TMCO5BA8MYB1 307 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 ARHGAP33O14559 1287 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 SNAP91O60641 907 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 IL1BP01584 269 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 SYPP08247 313 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 RRM1P23921 792 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 DLG2Q15700 870 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 SKOR2Q2VWA4 1001 aaPredicted RBP20.96■□□□□ 0.95
HDAC4-209ENST00000487617 PPP1R2P3Q6NXS1 205 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 SH2D3CQ8N5H7 860 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 DCAF4L2Q8NA75 395 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 EDEM3Q9BZQ6 932 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 TTYH3Q9C0H2 523 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 PPARGC1AQ9UBK2 798 aaKnown RBP20.96■□□□□ 0.95
HDAC4-209ENST00000487617 SERGEFQ9UGK8 458 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 VPS51Q9UID3 782 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 CEP192Q8TEP8 1941 aa20.96■□□□□ 0.95
HDAC4-209ENST00000487617 ILVBLA1L0T0 632 aa20.95■□□□□ 0.94
HDAC4-209ENST00000487617 RNASEH2AO75792 299 aaKnown RBP20.95■□□□□ 0.94
HDAC4-209ENST00000487617 FSBPO95073 299 aa20.95■□□□□ 0.94
HDAC4-209ENST00000487617 ADH1BP00325 375 aa20.95■□□□□ 0.94
HDAC4-209ENST00000487617 C5AR1P21730 350 aa20.95■□□□□ 0.94
HDAC4-209ENST00000487617 ZNF143P52747 638 aaPredicted RBP20.95■□□□□ 0.94
HDAC4-209ENST00000487617 UBASH3AP57075 661 aa20.95■□□□□ 0.94
HDAC4-209ENST00000487617 RPL7AP62424 266 aaKnown RBP20.95■□□□□ 0.94
HDAC4-209ENST00000487617 NRG1Q02297 640 aaPredicted RBP20.95■□□□□ 0.94
HDAC4-209ENST00000487617 KLHL30Q0D2K2 578 aa20.95■□□□□ 0.94
HDAC4-209ENST00000487617 E4F1Q66K89 784 aaPredicted RBP20.95■□□□□ 0.94
HDAC4-209ENST00000487617 RWDD4Q6NW29 188 aaKnown RBP20.95■□□□□ 0.94
HDAC4-209ENST00000487617 DCUN1D2Q6PH85 259 aa20.95■□□□□ 0.94
HDAC4-209ENST00000487617 ZNF571Q7Z3V5 609 aaPredicted RBP20.95■□□□□ 0.94
HDAC4-209ENST00000487617 HDDC3Q8N4P3 179 aa20.95■□□□□ 0.94
HDAC4-209ENST00000487617 CCDC185Q8N715 623 aa20.95■□□□□ 0.94
HDAC4-209ENST00000487617 ATP11CQ8NB49 1132 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms