RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 CMTM5Q96DZ9 223 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 THAP1Q9NVV9 213 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 SUN2Q9UH99 717 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 CDYLQ9Y232 598 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 COL5A3P25940 1745 aaPredicted RBP13.49□□□□□ -0.25
HMGN1-216ENST00000486741 LAMB2P55268 1798 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 MYH9P35579 1960 aaKnown RBP13.49□□□□□ -0.25
HMGN1-216ENST00000486741 CXorf49A8MYA2 514 aaPredicted RBP13.49□□□□□ -0.25
HMGN1-216ENST00000486741 KIF3CO14782 793 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 ALADP13716 330 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 TSPAN8P19075 237 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 TKTP29401 623 aaKnown RBP13.49□□□□□ -0.25
HMGN1-216ENST00000486741 RPL9P32969 192 aaKnown RBP13.49□□□□□ -0.25
HMGN1-216ENST00000486741 CLDN10P78369 228 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 SATB1Q01826 763 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 DUSP4Q13115 394 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 BFSP2Q13515 415 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 TAC4Q86UU9 113 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 SLC41A1Q8IVJ1 513 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 IGDCC3Q8IVU1 814 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 TDRD5Q8NAT2 981 aaKnown RBP13.49□□□□□ -0.25
HMGN1-216ENST00000486741 CXCL16Q9H2A7 254 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 NMRAL1Q9HBL8 299 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 BCLAF3A2AJT9 711 aaKnown RBP13.48□□□□□ -0.25
HMGN1-216ENST00000486741 SOCS7O14512 581 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 ENTPD5O75356 428 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 PDE5AO76074 875 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 CNTFP26441 200 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 HOXA11P31270 313 aaPredicted RBP13.48□□□□□ -0.25
HMGN1-216ENST00000486741 SLC5A3P53794 718 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 DNAL1Q4LDG9 190 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 SPANXN3Q5MJ09 141 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 LRRC8EQ6NSJ5 796 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 PACS1Q6VY07 963 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 TSPAN17Q96FV3 270 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 TBC1D10AQ9BXI6 508 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 RNF208Q9H0X6 261 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 YY1AP1Q9H869 796 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 TRPM5Q9NZQ8 1165 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 VPS28Q9UK41 221 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 MYO18AQ92614 2054 aaKnown RBP13.48□□□□□ -0.25
HMGN1-216ENST00000486741 ZBTB42B2RXF5 422 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 TRIM13O60858 407 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 BEST1O76090 585 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 SERPINE1P05121 402 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 HADHAP40939 763 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 OXCT1P55809 520 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 DAOAP59103 153 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 NCALDP61601 193 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 CDK16Q00536 496 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 TRIP10Q15642 601 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 SGO1Q5FBB7 561 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 ADGRD1Q6QNK2 874 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 SEC14L1Q92503 715 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 CPNE1Q99829 537 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 PAAF1Q9BRP4 392 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 APOL5Q9BWW9 433 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 KANSL3Q9P2N6 904 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 NENFQ9UMX5 172 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 PTCH2Q9Y6C5 1203 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 C9IYK1 514 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 UNC5CO95185 931 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 ALDH1A1P00352 501 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 RHOCP08134 193 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 CSH1P0DML2 217 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 CSH2P0DML3 217 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 CALB2P22676 271 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 WEE1P30291 646 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 CD151P48509 253 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 GJA9P57773 515 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 USP4Q13107 963 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 GRTP1Q5TC63 336 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 ARHGAP17Q68EM7 881 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 NEPROQ6NW34 567 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 NUP93Q8N1F7 819 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 AGAP11Q8TF27 550 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 MARK4Q96L34 752 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 CATSPER2Q96P56 530 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 TRIM4Q9C037 500 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 NSMCE4AQ9NXX6 385 aa13.48□□□□□ -0.25
HMGN1-216ENST00000486741 ITGB6P18564 788 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 SP100P23497 879 aaPredicted RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 SEL1L3Q68CR1 1132 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 LPCAT1Q8NF37 534 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 MIPOL1Q8TD10 442 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 DDI1Q8WTU0 396 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 ADAM7Q9H2U9 754 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 ADAMTSL1Q8N6G6 1762 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 SRRM3A6NNA2 597 aaPredicted RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 HNRNPCL1O60812 293 aaKnown RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 TOP3BO95985 862 aaKnown RBP13.47□□□□□ -0.25
HMGN1-216ENST00000486741 IVDP26440 423 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 NPY2RP49146 381 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 GRIK3Q13003 919 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 AGAP9Q5VTM2 703 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 PDPK2PQ6A1A2 396 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 IFNL1Q8IU54 200 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 ELMOD1Q8N336 334 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 STK32AQ8WU08 396 aa13.47□□□□□ -0.25
HMGN1-216ENST00000486741 KCTD4Q8WVF5 259 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms