RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ALG14Q96F25 216 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 MYO19Q96H55 970 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 SPACA7Q96KW9 195 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 MRGPRX1Q96LB2 322 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 PPP1R9BQ96SB3 815 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 EPAS1Q99814 870 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 SNRNP25Q9BV90 132 aaKnown RBP15.15■□□□□ 0.02
USP4-212ENST00000486549 MKRN2Q9H000 416 aaKnown RBP15.15■□□□□ 0.02
USP4-212ENST00000486549 DHX35Q9H5Z1 703 aaKnown RBP15.15■□□□□ 0.02
USP4-212ENST00000486549 PRDM16Q9HAZ2 1276 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 CD93Q9NPY3 652 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 SLCO3A1Q9UIG8 710 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 USP18Q9UMW8 372 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 AP4E1Q9UPM8 1137 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 PLXND1Q9Y4D7 1925 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 WDR87Q6ZQQ6 2873 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 A0A0D9SEW6 157 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 SNAP91O60641 907 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 LRCH4O75427 683 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 RHOQP17081 205 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 BCKDHBP21953 392 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 EPHB2P29323 1055 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 L1CAMP32004 1257 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 NNMTP40261 264 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 COPAP53621 1224 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 CA9Q16790 459 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 TMPRSS6Q8IU80 811 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 DCLK2Q8N568 766 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 OR2T3Q8NH03 318 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 PSMB7Q99436 277 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 SPON2Q9BUD6 331 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 PRSS16Q9NQE7 514 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 NDFIP2Q9NV92 336 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 ZNF212Q9UDV6 495 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 SUN2Q9UH99 717 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 IP6K2Q9UHH9 426 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 DNAI1Q9UI46 699 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 CYP8B1Q9UNU6 501 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 NEU3Q9UQ49 428 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 OR51B4Q9Y5P0 310 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 GPR179Q6PRD1 2367 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 THADAQ6YHU6 1953 aa15.14■□□□□ 0.01
USP4-212ENST00000486549 SDK1Q7Z5N4 2213 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 ZNF292O60281 2723 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 ILVBLA1L0T0 632 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 MAP3K13O43283 966 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 SIN3BO75182 1162 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 TCF4P15884 667 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 GLDCP23378 1020 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 P2RY2P41231 377 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 SSR1P43307 286 aaKnown RBP15.13■□□□□ 0.01
USP4-212ENST00000486549 MAPKAPK2P49137 400 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 TPI1P60174 286 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 KRT83P78385 493 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 GNA12Q03113 381 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 CAMK2GQ13555 558 aaPredicted RBP15.13■□□□□ 0.01
USP4-212ENST00000486549 PIGHQ14442 188 aaPredicted RBP15.13■□□□□ 0.01
USP4-212ENST00000486549 SMTNL2Q2TAL5 461 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 HNRNPA1L2Q32P51 320 aaKnown RBP15.13■□□□□ 0.01
USP4-212ENST00000486549 MAP7D1Q3KQU3 841 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 ACCSLQ4AC99 568 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 PPP6R3Q5H9R7 873 aaPredicted RBP15.13■□□□□ 0.01
USP4-212ENST00000486549 ERMARDQ5T6L9 678 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 NLRP14Q86W24 1093 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 PRCCQ92733 491 aaPredicted RBP15.13■□□□□ 0.01
USP4-212ENST00000486549 SIPA1Q96FS4 1042 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 KCTD15Q96SI1 283 aaPredicted RBP15.13■□□□□ 0.01
USP4-212ENST00000486549 C2orf49Q9BVC5 232 aaPredicted RBP15.13■□□□□ 0.01
USP4-212ENST00000486549 ZWILCHQ9H900 591 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 ATP13A1Q9HD20 1204 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 TMEM248Q9NWD8 314 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 VPS51Q9UID3 782 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 CDV3Q9UKY7 258 aaKnown RBP15.13■□□□□ 0.01
USP4-212ENST00000486549 ABCA7Q8IZY2 2146 aa15.13■□□□□ 0.01
USP4-212ENST00000486549 CEP192Q8TEP8 1941 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 EDDM13A0A1B0GTR0 161 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 MYO1FO00160 1098 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 CBX4O00257 560 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 EEF2KO00418 725 aaKnown RBP15.12■□□□□ 0.01
USP4-212ENST00000486549 RHOBTB1O94844 696 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 TMEM253P0C7T8 217 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 ACADMP11310 421 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 VAV1P15498 845 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 GJC1P36383 396 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 SEMA3BQ13214 749 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 BYSLQ13895 437 aaKnown RBP15.12■□□□□ 0.01
USP4-212ENST00000486549 ACAP1Q15027 740 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 ELF2Q15723 593 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 CSRP2Q16527 193 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 PLK5Q496M5 336 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 KCNT1Q5JUK3 1230 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 IL31Q6EBC2 164 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 LINGO4Q6UY18 593 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 CYP4V2Q6ZWL3 525 aaPredicted RBP15.12■□□□□ 0.01
USP4-212ENST00000486549 ZNF354CQ86Y25 554 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 DCAF4L2Q8NA75 395 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 KDM1BQ8NB78 822 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 SPC24Q8NBT2 197 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 HSPH1Q92598 858 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 NCAPGQ9BPX3 1015 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms