RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 HS3ST4Q9Y661 456 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 COL4A2P08572 1712 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 SSU72P8A0A1W2PR75 194 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 C2CD4BA6NLJ0 364 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 MEI4A8MW99 385 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 CBX4O00257 560 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 EEF2KO00418 725 aaKnown RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 DDX3XO00571 662 aaKnown RBP eCLIP8.26□□□□□ -1.09
USP40-216ENST00000485943 TRIM24O15164 1050 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 GJB6O95452 261 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 PLEKP08567 350 aaPredicted RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 TNNT1P13805 278 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 SLC6A4P31645 630 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 CSKP41240 450 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 DHPSP49366 369 aaPredicted RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 NUMBP49757 651 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 ZNF75DP51815 510 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 GSCP56915 257 aaPredicted RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 PITX1P78337 314 aaPredicted RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 GFPT1Q06210 699 aaPredicted RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 LMAN2Q12907 356 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 ZNF234Q14588 700 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 ACAP1Q15027 740 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 SLC18A3Q16572 532 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 LPAL2Q16609 132 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 GEN1Q17RS7 908 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 CCDC14Q49A88 953 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 FAM133BQ5BKY9 247 aaKnown RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 PITRM1Q5JRX3 1037 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 CFAP58Q5T655 872 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 DPY19L2P1Q6NXN4 242 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 FBXL22Q6P050 247 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 SLC36A4Q6YBV0 504 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 WDR5BQ86VZ2 330 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 CIR1Q86X95 450 aaPredicted RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 MAP7D3Q8IWC1 876 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 RGL4Q8IZJ4 473 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 C12orf50Q8NA57 414 aaPredicted RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 IL17RCQ8NAC3 791 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 FIBINQ8TAL6 211 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 ZNF564Q8TBZ8 553 aaPredicted RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 SNX19Q92543 992 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 HSPH1Q92598 858 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 SIPA1Q96FS4 1042 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 MRFAP1L1Q96HT8 127 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 MAK16Q9BXY0 300 aaKnown RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 TTYH3Q9C0H2 523 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 NHEJ1Q9H9Q4 299 aaPredicted RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 FBRSQ9HAH7 460 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 PRDM16Q9HAZ2 1276 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 ATP13A1Q9HD20 1204 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 PRMT8Q9NR22 394 aaPredicted RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 ARHGEF38Q9NXL2 777 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 UVRAGQ9P2Y5 699 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 XPO7Q9UIA9 1087 aaKnown RBP8.26□□□□□ -1.09
USP40-216ENST00000485943 STOML2Q9UJZ1 356 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 TMEM59LQ9UK28 342 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 USP18Q9UMW8 372 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 RAD54BQ9Y620 910 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 STON1Q9Y6Q2 735 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 COL4A3Q01955 1670 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 KIAA1549LQ6ZVL6 1849 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 CACNA1IQ9P0X4 2223 aa8.26□□□□□ -1.09
USP40-216ENST00000485943 TRIOO75962 3097 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 GOLGA6L3A6NEY3 463 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 TMEM229AB2RXF0 380 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 EIF3CLB5ME19 914 aaKnown RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 PRRT4C9JH25 899 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 C1QTNF3-AMACRE9PGA6 284 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 H3BRJ5 948 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 SGK1O00141 431 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 FGF10O15520 208 aaPredicted RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 AP5Z1O43299 807 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 SPOPO43791 374 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 RAMP2O60895 175 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 IGLV3-25P01717 112 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 SRPRAP08240 638 aaKnown RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 XPAP23025 273 aaPredicted RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 HLA-FP30511 346 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 CD70P32970 193 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 ADRA1BP35368 520 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 PLA2G5P39877 138 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 PBX1P40424 430 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 CETN2P41208 172 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 MAPKAPK2P49137 400 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 ATXN3P54252 364 aaPredicted RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 ATXN1P54253 815 aaKnown RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 RPL7AP62424 266 aaKnown RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 RPL6Q02878 288 aaKnown RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 RAD51Q06609 339 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 TCF15Q12870 199 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 MAMLD1Q13495 774 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 POLD3Q15054 466 aaPredicted RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 IFI16Q16666 785 aaKnown RBP8.25□□□□□ -1.09
USP40-216ENST00000485943 PLEKHG6Q3KR16 790 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 SYCP2LQ5T4T6 812 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 ERMARDQ5T6L9 678 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 NADSYN1Q6IA69 706 aa8.25□□□□□ -1.09
USP40-216ENST00000485943 LPCAT2Q7L5N7 544 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms