RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 KRT10P13645 584 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 KLRC2P26717 231 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 TNFSF8P32971 234 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 PMS2P54278 862 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 SELENOVP59797 346 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 PKP1Q13835 747 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 LRRC24Q50LG9 513 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 INO80DQ53TQ3 878 aaPredicted RBP3.57□□□□□ -1.84
VPS50-216ENST00000484954 SYCP2LQ5T4T6 812 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 KLBQ86Z14 1044 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 LRRC57Q8N9N7 239 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 ATG16L2Q8NAA4 619 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 ZNF527Q8NB42 609 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 SVIPQ8NHG7 77 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 TMEM204Q9BSN7 226 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 WDR12Q9GZL7 423 aaKnown RBP3.57□□□□□ -1.84
VPS50-216ENST00000484954 SLCO5A1Q9H2Y9 848 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 ABHD16BQ9H3Z7 469 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 Q9N2J8 555 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 ARFGAP3Q9NP61 516 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 NFU1Q9UMS0 254 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 PTGDR2Q9Y5Y4 395 aa3.57□□□□□ -1.84
VPS50-216ENST00000484954 NPIPB13A6NJU9 1138 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 NPIPB5A8MRT5 1133 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 NPIPB4C9JG80 1138 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 ACTL6BO94805 426 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 ACAA1P09110 424 aaPredicted RBP3.56□□□□□ -1.84
VPS50-216ENST00000484954 CPA1P15085 419 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 TYK2P29597 1187 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 ABATP80404 500 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 BTKQ06187 659 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 LTBQ06643 244 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 CDK18Q07002 472 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 GPS2Q13227 327 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 GPR18Q14330 331 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 SLC4A8Q2Y0W8 1093 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 TTC22Q5TAA0 569 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 ZNF324BQ6AW86 544 aaPredicted RBP3.56□□□□□ -1.84
VPS50-216ENST00000484954 CCSAPQ6IQ19 270 aaPredicted RBP3.56□□□□□ -1.84
VPS50-216ENST00000484954 ERAP2Q6P179 960 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 MTFR2Q6P444 385 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 TMEM71Q6P5X7 295 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 RASGRP2Q7LDG7 609 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 ANKS1BQ7Z6G8 1248 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 MORC1Q86VD1 984 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 SLC44A2Q8IWA5 706 aaPredicted RBP3.56□□□□□ -1.84
VPS50-216ENST00000484954 FAM217AQ8IXS0 508 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 VPS52Q8N1B4 723 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 C2CD4CQ8TF44 421 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 EID2BQ96D98 161 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 RTKNQ9BST9 563 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 SF3B5Q9BWJ5 86 aaKnown RBP3.56□□□□□ -1.84
VPS50-216ENST00000484954 B3GNT4Q9C0J1 378 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 KRCC1Q9NPI7 259 aaPredicted RBP3.56□□□□□ -1.84
VPS50-216ENST00000484954 PRDM8Q9NQV8 689 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 LIN7CQ9NUP9 197 aaKnown RBP3.56□□□□□ -1.84
VPS50-216ENST00000484954 TMEM248Q9NWD8 314 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 PLEKHB1Q9UF11 243 aaPredicted RBP3.56□□□□□ -1.84
VPS50-216ENST00000484954 ZNF112Q9UJU3 913 aa3.56□□□□□ -1.84
VPS50-216ENST00000484954 TCF20Q9UGU0 1960 aaKnown RBP3.56□□□□□ -1.84
VPS50-216ENST00000484954 A0A0A0MQY5 61 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 SYT5O00445 386 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 ACKR2O00590 384 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 KLKB1P03952 638 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 CYP1A2P05177 515 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 IFIT2P09913 472 aaKnown RBP3.55□□□□□ -1.84
VPS50-216ENST00000484954 CHRNB2P17787 502 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 CHRNA5P30532 468 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 SLC16A2P36021 539 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 MLH1P40692 756 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 PDLIM4P50479 330 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 RASSF2P50749 326 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 Q0VFX4 171 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 ZACNQ401N2 412 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 SULT6B1Q6IMI4 303 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 NFRKBQ6P4R8 1299 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 AAGABQ6PD74 315 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 Q6ZSV7 163 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 RRAGAQ7L523 313 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 RBM23Q86U06 439 aaKnown RBP3.55□□□□□ -1.84
VPS50-216ENST00000484954 SPATA2LQ8IUW3 424 aaPredicted RBP3.55□□□□□ -1.84
VPS50-216ENST00000484954 ADHFE1Q8IWW8 467 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 IQCF1Q8N6M8 205 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 GABPB2Q8TAK5 448 aaPredicted RBP3.55□□□□□ -1.84
VPS50-216ENST00000484954 ADAMTS14Q8WXS8 1223 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 RSC1A1Q92681 617 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 NPAS1Q99742 590 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 NTPCRQ9BSD7 190 aaKnown RBP3.55□□□□□ -1.84
VPS50-216ENST00000484954 CRB3Q9BUF7 120 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 BRD8Q9H0E9 1235 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 PABPC3Q9H361 631 aaKnown RBP3.55□□□□□ -1.84
VPS50-216ENST00000484954 ELAC1Q9H777 363 aaKnown RBP3.55□□□□□ -1.84
VPS50-216ENST00000484954 PDE11AQ9HCR9 933 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 SLC22A11Q9NSA0 550 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 NCKIPSDQ9NZQ3 722 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 KCND3Q9UK17 655 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 MYO6Q9UM54 1294 aa3.55□□□□□ -1.84
VPS50-216ENST00000484954 ABHD14A-ACY1A0A1B0GW23 586 aa3.54□□□□□ -1.84
VPS50-216ENST00000484954 CLEC18AA5D8T8 446 aa3.54□□□□□ -1.84
VPS50-216ENST00000484954 GAGE12JA6NER3 117 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms