RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 ZBTB40Q9NUA8 1239 aa4.34□□□□□ -1.71
VPS41-212ENST00000482217 AURKAIP1Q9NWT8 199 aaPredicted RBP4.34□□□□□ -1.71
VPS41-212ENST00000482217 HMG20BQ9P0W2 317 aa4.34□□□□□ -1.71
VPS41-212ENST00000482217 COL20A1Q9P218 1284 aa4.34□□□□□ -1.71
VPS41-212ENST00000482217 PCDHA6Q9UN73 950 aa4.34□□□□□ -1.71
VPS41-212ENST00000482217 MED16Q9Y2X0 877 aa4.34□□□□□ -1.71
VPS41-212ENST00000482217 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.34□□□□□ -1.71
VPS41-212ENST00000482217 XDHP47989 1333 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 TTC21BQ7Z4L5 1316 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 A0A1W2PQ09 198 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 CDHR4A6H8M9 788 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 TRIM43BA6NCK2 446 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 FOXO6A8MYZ6 492 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 NOL3O60936 208 aaKnown RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 ENTPD3O75355 529 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 TSPAN9O75954 239 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 CLEC3BP05452 202 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 INHBAP08476 426 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 PRR35P0CG20 571 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 INSRRP14616 1297 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 CDH3P22223 829 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 GCSHP23434 173 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 SLC6A2P23975 617 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 TBXAS1P24557 533 aaPredicted RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 GCH1P30793 250 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 ADRA1BP35368 520 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 GGT5P36269 586 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 TAGLN2P37802 199 aaKnown RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 ACAA2P42765 397 aaKnown RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 OR1G1P47890 313 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 CAMLGP49069 296 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 AMPHP49418 695 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 CHN2P52757 468 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 ARFIP2P53365 341 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 NOMO3P69849 1222 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 KCNJ10P78508 379 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 FAM189BP81408 668 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 TFAP4Q01664 338 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 EXOSC9Q06265 439 aaKnown RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 MAMLD1Q13495 774 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 SYCP1Q15431 976 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 UTP14CQ5TAP6 766 aaKnown RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 GARNL3Q5VVW2 1013 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 RRAGBQ5VZM2 374 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 SLC30A9Q6PML9 568 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 CLEC2AQ6UVW9 174 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 Q6ZRM9 215 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 IKBIPQ70UQ0 350 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 MED25Q71SY5 747 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 RRAGAQ7L523 313 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 GGNQ86UU5 652 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 FAM160B2Q86V87 743 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 CAND1Q86VP6 1230 aaKnown RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 SYT12Q8IV01 421 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 LINC00346Q8IVM7 164 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 TUSC5Q8IXB3 177 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 RHOT2Q8IXI1 618 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 FAM217AQ8IXS0 508 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 PEX5LQ8IYB4 626 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 SLC7A5P1Q8MH63 180 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 ADSSL1Q8N142 457 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 FBXW8Q8N3Y1 598 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 DPP10Q8N608 796 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 GLIS1Q8NBF1 620 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 BBOF1Q8ND07 529 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 OR6B3Q8NGW1 331 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 TBC1D15Q8TC07 691 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 SLC5A11Q8WWX8 675 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 THAP4Q8WY91 577 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 TRIM43Q96BQ3 446 aaPredicted RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 SIPA1Q96FS4 1042 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 ADAD1Q96M93 576 aaKnown RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 ADOQ96SZ5 270 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 CITED2Q99967 270 aaPredicted RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 MMTAG2Q9BU76 263 aaKnown RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 CCDC106Q9BWC9 280 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 TRIM54Q9BYV2 358 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 GCOM2Q9BZD3 368 aaPredicted RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 DPH1Q9BZG8 443 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 KLC2Q9H0B6 622 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 HSD3B7Q9H2F3 369 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 ABHD16BQ9H3Z7 469 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 SLAMF7Q9NQ25 335 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 NMRK1Q9NWW6 199 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 ZDHHC7Q9NXF8 308 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 SELENONQ9NZV5 590 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 CHMP5Q9NZZ3 219 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 ST6GALNAC2Q9UJ37 374 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 HOOK1Q9UJC3 728 aaKnown RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 ANAPC5Q9UJX4 755 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 AGO2Q9UKV8 859 aaKnown RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 MTUS1Q9ULD2 1270 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 HSF4Q9ULV5 492 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 TBX20Q9UMR3 447 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 MRPL11Q9Y3B7 192 aaKnown RBP4.33□□□□□ -1.72
VPS41-212ENST00000482217 TESMINQ9Y4I5 508 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 CCL27Q9Y4X3 112 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 SLC4A4Q9Y6R1 1079 aa4.33□□□□□ -1.72
VPS41-212ENST00000482217 SPAG9O60271 1321 aaKnown RBP4.32□□□□□ -1.72
VPS41-212ENST00000482217 KIF16BQ96L93 1317 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms