RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 KRTAP3-1Q9BYR8 98 aa5.56□□□□□ -1.52
UPF3B-203ENST00000478840 ASIC5Q9NY37 505 aa5.56□□□□□ -1.52
UPF3B-203ENST00000478840 SLCO3A1Q9UIG8 710 aa5.56□□□□□ -1.52
UPF3B-203ENST00000478840 TSC22D4Q9Y3Q8 395 aa5.56□□□□□ -1.52
UPF3B-203ENST00000478840 C17orf113A0A1B0GUU1 675 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 GCOM1H8Y6P7 765 aaPredicted RBP5.55□□□□□ -1.52
UPF3B-203ENST00000478840 CLIC1O00299 241 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 SYN3O14994 580 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 PDE8BO95263 885 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 ADH4P08319 380 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 HKR1P10072 659 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 AKR1B1P15121 316 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 TGM2P21980 687 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 COPB1P53618 953 aaKnown RBP5.55□□□□□ -1.52
UPF3B-203ENST00000478840 MC1RQ01726 317 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 TAP1Q03518 808 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 IL13RA2Q14627 380 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 LARS2Q15031 903 aaKnown RBP5.55□□□□□ -1.52
UPF3B-203ENST00000478840 RILPL1Q5EBL4 403 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 SPDYAQ5MJ70 313 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 CFAP58Q5T655 872 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 LCE1DQ5T752 114 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 LAIR1Q6GTX8 287 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 MDGA2Q7Z553 956 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 TMEM200AQ86VY9 491 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 VPS52Q8N1B4 723 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 TTC39CQ8N584 583 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 TERB1Q8NA31 727 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 SETD9Q8NE22 299 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 FAM120BQ96EK7 910 aaKnown RBP5.55□□□□□ -1.52
UPF3B-203ENST00000478840 C8orf49Q96NF6 230 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 ASB2Q96Q27 587 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 PIP5K1AQ99755 562 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 MLST8Q9BVC4 326 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 TXNRD2Q9NNW7 524 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 PCDHB16Q9NRJ7 776 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 TMEM248Q9NWD8 314 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 SMPD4Q9NXE4 827 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 ADD3Q9UEY8 706 aaKnown RBP5.55□□□□□ -1.52
UPF3B-203ENST00000478840 DTX4Q9Y2E6 619 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 SNX8Q9Y5X2 465 aa5.55□□□□□ -1.52
UPF3B-203ENST00000478840 hCG_1807616A0A1W2PRN6 198 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 LIPT2A6NK58 231 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 LINC00473A8K010 186 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 LDLRAD4O15165 306 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 VILLO15195 856 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 HBP1O60381 514 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 TSPAN9O75954 239 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 ENO1P06733 434 aaKnown RBP5.54□□□□□ -1.52
UPF3B-203ENST00000478840 ELFN1P0C7U0 828 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 EBLN1P0CF75 366 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 CSH1P0DML2 217 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 CSH2P0DML3 217 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 HOXA5P20719 270 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 ACTN2P35609 894 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 CPOXP36551 454 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 MPLP40238 635 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 NLRP5P59047 1200 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 EPS8Q12929 822 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 AP5B1Q2VPB7 878 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 ZNF667Q5HYK9 610 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 PCID2Q5JVF3 399 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 TMEM81Q6P7N7 255 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 NCEH1Q6PIU2 408 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 IKBIPQ70UQ0 350 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 RRM2BQ7LG56 351 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 NEK8Q86SG6 692 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 PALM2Q8IXS6 379 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 ULK2Q8IYT8 1036 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 C11orf65Q8NCR3 313 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 FAM110DQ8TAY7 271 aaPredicted RBP5.54□□□□□ -1.52
UPF3B-203ENST00000478840 CXorf38Q8TB03 319 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 NEK9Q8TD19 979 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 KLHL29Q96CT2 875 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 BBC3Q96PG8 261 aaPredicted RBP5.54□□□□□ -1.52
UPF3B-203ENST00000478840 PLEKHG4BQ96PX9 1271 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 CIPCQ9C0C6 399 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 ERVK-5Q9HDB9 667 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 ASNSD1Q9NWL6 643 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 TFCP2L1Q9NZI6 479 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 CDH22Q9UJ99 828 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 SLC25A13Q9UJS0 675 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 CLDN16Q9Y5I7 305 aa5.54□□□□□ -1.52
UPF3B-203ENST00000478840 BTBD19C9JJ37 291 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 PTGES3LE9PB15 166 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 H7C1Q1 480 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 TAF4O00268 1085 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 PGM3O95394 542 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 ESRRBO95718 433 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 SPARCP09486 303 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 GSTM2P28161 218 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 KRT20P35900 424 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 HADHAP40939 763 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 CCT8P50990 548 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 NEXNQ0ZGT2 675 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 CHAF1BQ13112 559 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 MFSD4BQ5TF39 518 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 VWA5B1Q5TIE3 1220 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 CDC73Q6P1J9 531 aa5.53□□□□□ -1.52
UPF3B-203ENST00000478840 CYP20A1Q6UW02 462 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms