RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 KRT19P08727 400 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 PLA2G4BP0C869 781 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 FGF3P11487 239 aaPredicted RBP4.98□□□□□ -1.61
USP4-209ENST00000475873 CDK11BP21127 795 aaKnown RBP4.98□□□□□ -1.61
USP4-209ENST00000475873 C5AR1P21730 350 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 F8A1P23610 371 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 BRD2P25440 801 aaKnown RBP4.98□□□□□ -1.61
USP4-209ENST00000475873 CHKAP35790 457 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 KRT2P35908 639 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 CSKP41240 450 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 SMTNP53814 917 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 SLC12A3P55017 1021 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 CNTN1Q12860 1018 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 STK3Q13188 491 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 NR6A1Q15406 480 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 IL17AQ16552 155 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 SETMARQ53H47 684 aaPredicted RBP4.98□□□□□ -1.61
USP4-209ENST00000475873 DCAF6Q58WW2 860 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 EFHC2Q5JST6 749 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 C10orf120Q5SQS8 335 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 RNF20Q5VTR2 975 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 HAUS3Q68CZ6 603 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 ADALQ6DHV7 355 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 MYO7BQ6PIF6 2116 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 LINGO4Q6UY18 593 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 MMS22LQ6ZRQ5 1243 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 Q6ZSR6 202 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 NYAP1Q6ZVC0 841 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 DYMQ7RTS9 669 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 NT5DC4Q86YG4 428 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 CCDC83Q8IWF9 413 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 BRSK2Q8IWQ3 736 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 CACNA2D3Q8IZS8 1091 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 IL22RA1Q8N6P7 574 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 WDR48Q8TAF3 677 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 ERMNQ8TAM6 284 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 LMX1AQ8TE12 382 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 SNX29Q8TEQ0 813 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 TTC17Q96AE7 1141 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 SAAL1Q96ER3 474 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 HPDLQ96IR7 371 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 PKNOX2Q96KN3 472 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 TMEM74Q96NL1 305 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 LRRC61Q9BV99 259 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 TRIM55Q9BYV6 548 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 CDH19Q9H159 772 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 LRRN3Q9H3W5 708 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 PDE11AQ9HCR9 933 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 CYP4F12Q9HCS2 524 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 DMAP1Q9NPF5 467 aaPredicted RBP4.98□□□□□ -1.61
USP4-209ENST00000475873 TLR8Q9NR97 1041 aaKnown RBP4.98□□□□□ -1.61
USP4-209ENST00000475873 KRT82Q9NSB4 513 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 EVA1BQ9NVM1 165 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 RRN3Q9NYV6 651 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 ITGA11Q9UKX5 1188 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 TPX2Q9ULW0 747 aaKnown RBP4.98□□□□□ -1.61
USP4-209ENST00000475873 SCML2Q9UQR0 700 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 RNF215Q9Y6U7 377 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 ITIH6Q6UXX5 1313 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 A0A1W2PQU0 124 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 PRSS44E7EML9 344 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 LMO7DNF2Z398 122 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 MKRN2OSH3BPM6 223 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 K7ENM7 598 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 YY2O15391 372 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 PRICKLE3O43900 615 aaPredicted RBP4.97□□□□□ -1.61
USP4-209ENST00000475873 RAD1O60671 282 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 JAK2O60674 1132 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 ZG16O60844 167 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 RNGTTO60942 597 aaKnown RBP4.97□□□□□ -1.61
USP4-209ENST00000475873 TACC1O75410 805 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 FAM155BO75949 473 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 IL18RAPO95256 599 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 CD2BP2O95400 341 aaKnown RBP4.97□□□□□ -1.61
USP4-209ENST00000475873 ADH1BP00325 375 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 IL1BP01584 269 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 HMGB1P09429 215 aaKnown RBP4.97□□□□□ -1.61
USP4-209ENST00000475873 CCDC130P13994 396 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 DRD2P14416 443 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 JUNDP17535 347 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 NUDT1P36639 197 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 GNL1P36915 607 aaPredicted RBP4.97□□□□□ -1.61
USP4-209ENST00000475873 NUMBP49757 651 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 STK19P49842 368 aaPredicted RBP4.97□□□□□ -1.61
USP4-209ENST00000475873 ATP1A2P50993 1020 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 FXR2P51116 673 aaKnown RBP eCLIP4.97□□□□□ -1.61
USP4-209ENST00000475873 ZNF131P52739 623 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 RBP5P82980 135 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 GTF2BQ00403 316 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 POU5F1Q01860 360 aaKnown RBP4.97□□□□□ -1.61
USP4-209ENST00000475873 GOLGA8FQ08AF8 430 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 KCNA1Q09470 495 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 GOLGA8DPQ0D2H9 430 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 PTK2BQ14289 1009 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 E2F5Q15329 346 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 ZNF174Q15697 407 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 PIP5KL1Q5T9C9 394 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 SEL1L3Q68CR1 1132 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 ZNF517Q6ZMY9 492 aaPredicted RBP4.97□□□□□ -1.61
USP4-209ENST00000475873 GDF7Q7Z4P5 450 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms