RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 TBC1D3KA0A087X1G2 549 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 TBC1D3FA6NER0 549 aaPredicted RBP20.32■□□□□ 0.84
COL9A3-210ENST00000472880 TBC1D3LB9A6J9 549 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 PAGE1O75459 146 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 DKK1O94907 266 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 WNT1P04628 370 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 TBC1D3HP0C7X1 549 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 PRKCSHP14314 528 aaPredicted RBP20.32■□□□□ 0.84
COL9A3-210ENST00000472880 CLCN1P35523 988 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 IRAK1P51617 712 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 BPIFB4P59827 614 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 CCDC157Q569K6 752 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 SLC45A4Q5BKX6 768 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 FAM46CQ5VWP2 391 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 TBC1D3GQ6DHY5 549 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 TBC1D3CQ6IPX1 549 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.32■□□□□ 0.84
COL9A3-210ENST00000472880 TMPRSS7Q7RTY8 843 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 ZDHHC17Q8IUH5 632 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 TBC1D3Q8IZP1 549 aaPredicted RBP20.32■□□□□ 0.84
COL9A3-210ENST00000472880 GALNT15Q8N3T1 639 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 ZNF397Q8NF99 534 aaPredicted RBP20.32■□□□□ 0.84
COL9A3-210ENST00000472880 FRS2Q8WU20 508 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 FEM1AQ9BSK4 669 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 GDF3Q9NR23 364 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 RRN3Q9NYV6 651 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 STAP1Q9ULZ2 295 aa20.32■□□□□ 0.84
COL9A3-210ENST00000472880 SPEGQ15772 3267 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 FAM208BQ5VWN6 2430 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 C1QTNF3-AMACRE9PGA6 284 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 FOXN3O00409 490 aaPredicted RBP20.31■□□□□ 0.84
COL9A3-210ENST00000472880 SLC7A4O43246 635 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 CLDN11O75508 207 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 CAPNS1P04632 268 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 DRD3P35462 400 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 VASPP50552 380 aaPredicted RBP20.31■□□□□ 0.84
COL9A3-210ENST00000472880 PPP2CBP62714 309 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 PPP2CAP67775 309 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 RAPGEF1Q13905 1077 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 TMEM35BQ8NCS4 154 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 OR52K2Q8NGK3 314 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 ALG14Q96F25 216 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 SIK2Q9H0K1 926 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 MUC3BQ9H195 1237 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 NDST4Q9H3R1 872 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 PLXNB3Q9ULL4 1909 aa20.31■□□□□ 0.84
COL9A3-210ENST00000472880 C10orf142B7Z368 130 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 TAF4O00268 1085 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 ALOX15BO15296 676 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 YKT6O15498 198 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 ATP9BO43861 1147 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 RTN2O75298 545 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 ITGAVP06756 1048 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 ZNF18P17022 549 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 SULT1E1P49888 294 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 METAP1P53582 386 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 CDH4P55283 916 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 VWA3BQ502W6 1294 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 BRMS1LQ5PSV4 323 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 PRAMEF14Q5SWL7 426 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 OTUD1Q5VV17 481 aaPredicted RBP20.3■□□□□ 0.84
COL9A3-210ENST00000472880 NAPEPLDQ6IQ20 393 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 Q6ZVU0 165 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 GATAD2AQ86YP4 633 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 FAM71AQ8IYT1 594 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 NPY6RQ99463 290 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 TUBGCP2Q9BSJ2 902 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 KDM4CQ9H3R0 1056 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 CLSTN2Q9H4D0 955 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 WDCPQ9H6R7 721 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 PIGVQ9NUD9 493 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.3■□□□□ 0.84
COL9A3-210ENST00000472880 DACH1Q9UI36 760 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 LHX6Q9UPM6 363 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 PAXBP1Q9Y5B6 917 aa20.3■□□□□ 0.84
COL9A3-210ENST00000472880 COL5A1P20908 1838 aaPredicted RBP20.3■□□□□ 0.84
COL9A3-210ENST00000472880 A0A1W2PR77 199 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 PLK4O00444 970 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 PES1O00541 588 aaKnown RBP20.29■□□□□ 0.84
COL9A3-210ENST00000472880 WNT9AO14904 365 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 LATO43561 262 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 PLRG1O43660 514 aaKnown RBP20.29■□□□□ 0.84
COL9A3-210ENST00000472880 BNIP3LO60238 219 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 RHOCP08134 193 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 ARRB1P49407 418 aaPredicted RBP20.29■□□□□ 0.84
COL9A3-210ENST00000472880 RNASE9P60153 205 aaKnown RBP20.29■□□□□ 0.84
COL9A3-210ENST00000472880 DLG2Q15700 870 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 HSP90AA4PQ58FG1 418 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 C14orf80Q86SX3 495 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 PRPF39Q86UA1 669 aaKnown RBP20.29■□□□□ 0.84
COL9A3-210ENST00000472880 SH2D3CQ8N5H7 860 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 PIP4K2CQ8TBX8 421 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 MDM1Q8TC05 714 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 FAM131CQ96AQ9 280 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 TKTL2Q9H0I9 626 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 ARHGEF38Q9NXL2 777 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 SARDHQ9UL12 918 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 TBC1D30Q9Y2I9 924 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 OR51B4Q9Y5P0 310 aa20.29■□□□□ 0.84
COL9A3-210ENST00000472880 PKD1L2Q7Z442 2459 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms