RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 VAV1P15498 845 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 FLT3P36888 993 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 SCNN1AP37088 669 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 CXCR3P49682 368 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 COPB1P53618 953 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 BNC1Q01954 994 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 SULT2A1Q06520 285 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 ZNF177Q13360 481 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 SLC25A52Q3SY17 297 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 LRSAM1Q6UWE0 723 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 USP30Q70CQ3 517 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 ANKRD20A12PQ8NF67 263 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 PTPRN2Q92932 1015 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 BIRC7Q96CA5 298 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 SPAG5Q96R06 1193 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 OMDQ99983 421 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 METTL5Q9NRN9 209 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 TMPRSS4Q9NRS4 437 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 ARHGEF38Q9NXL2 777 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 SLC25A13Q9UJS0 675 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 NOCTQ9UK39 431 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 FAM208BQ5VWN6 2430 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 A0A1B0GVT2 93 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 I6L893 689 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 CBFA2T3O75081 653 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 CLDN11O75508 207 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 CNTN5O94779 1100 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 F9P00740 461 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 ZNF18P17022 549 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 SLC8A1P32418 973 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 SOX5P35711 763 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 CSNK1EP49674 416 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 PLK1P53350 603 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 CDH4P55283 916 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 MYL5Q02045 173 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 SFSWAPQ12872 951 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 SYCP1Q15431 976 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 ACCSLQ4AC99 568 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 KIAA0895LQ68EN5 471 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 TRNP1Q6NT89 227 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 LAYNQ6UX15 382 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 PHLDB2Q86SQ0 1253 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 ZNF677Q86XU0 584 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 C1orf216Q8TAB5 229 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 ADAMTS14Q8WXS8 1223 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 NT5C3BQ969T7 300 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 ALG14Q96F25 216 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 PGAP3Q96FM1 320 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 CFAP57Q96MR6 1250 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 PPP1R9BQ96SB3 815 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 FAM129BQ96TA1 746 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 FEM1AQ9BSK4 669 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 MUC3BQ9H195 1237 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 NEUROG2Q9H2A3 272 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 GAREM1Q9H706 876 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 TM9SF3Q9HD45 589 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 VPS28Q9UK41 221 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 PCOLCE2Q9UKZ9 415 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 FNDC3AQ9Y2H6 1198 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 SIK3Q9Y2K2 1263 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 PAXBP1Q9Y5B6 917 aa16.16■□□□□ 0.18
CCDC88B-205ENST00000472524 CACNA1GO43497 2377 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 CHD5Q8TDI0 1954 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 CER1O95813 267 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 ADH1BP00325 375 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 IL1BP01584 269 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 RHOCP08134 193 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 CDK11BP21127 795 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 AFF3P51826 1226 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 GALCP54803 685 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 JAM2P57087 298 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 FMO1Q01740 532 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 CDR2Q01850 454 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 SCAPQ12770 1279 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 ELAVL3Q14576 367 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 TEAD4Q15561 434 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 HLA-BQ31612 363 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 ALFQ53S48 1182 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 CCDC183Q5T5S1 534 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 NCEH1Q6PIU2 408 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 SLCO6A1Q86UG4 719 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 AADATQ8N5Z0 425 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 EMC1Q8N766 993 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 NEK11Q8NG66 645 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 LIMA1Q9UHB6 759 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 LHX6Q9UPM6 363 aa16.15■□□□□ 0.18
CCDC88B-205ENST00000472524 DSPP15924 2871 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-205ENST00000472524 LGALS16A8MUM7 142 aa16.14■□□□□ 0.17
CCDC88B-205ENST00000472524 BNIP3LO60238 219 aa16.14■□□□□ 0.17
CCDC88B-205ENST00000472524 MBD3O95983 291 aa16.14■□□□□ 0.17
CCDC88B-205ENST00000472524 CYP1A1P04798 512 aaPredicted RBP16.14■□□□□ 0.17
CCDC88B-205ENST00000472524 IGHV4-34P06331 123 aa16.14■□□□□ 0.17
CCDC88B-205ENST00000472524 CHRNB2P17787 502 aa16.14■□□□□ 0.17
CCDC88B-205ENST00000472524 C5AR1P21730 350 aa16.14■□□□□ 0.17
CCDC88B-205ENST00000472524 CD27P26842 260 aa16.14■□□□□ 0.17
CCDC88B-205ENST00000472524 STAT1P42224 750 aa16.14■□□□□ 0.17
CCDC88B-205ENST00000472524 ATP11AP98196 1134 aa16.14■□□□□ 0.17
CCDC88B-205ENST00000472524 UBXN1Q04323 297 aa16.14■□□□□ 0.17
CCDC88B-205ENST00000472524 COL9A2Q14055 689 aaPredicted RBP16.14■□□□□ 0.17
CCDC88B-205ENST00000472524 C5orf22Q49AR2 442 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms