RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 VANGL2Q9ULK5 521 aa18■□□□□ 0.47
COL7A1-208ENST00000470076 APC2O95996 2303 aa18■□□□□ 0.47
COL7A1-208ENST00000470076 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-208ENST00000470076 M0QYT0 321 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 FOXN3O00409 490 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-208ENST00000470076 ATP9BO43861 1147 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 CLDN11O75508 207 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 VAV1P15498 845 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 DRD3P35462 400 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 CLCN1P35523 988 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 BPIFB4P59827 614 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 CENPCQ03188 943 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 ZNF177Q13360 481 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-208ENST00000470076 PTPN20Q4JDL3 420 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 SLC45A4Q5BKX6 768 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 FAM46CQ5VWP2 391 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 SLC47A2Q86VL8 602 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 GALNT15Q8N3T1 639 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 OR8D1Q8WZ84 308 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 FAM131CQ96AQ9 280 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 ALG14Q96F25 216 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 KDM4CQ9H3R0 1056 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 AJAP1Q9UKB5 411 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-208ENST00000470076 HS3ST4Q9Y661 456 aa17.99■□□□□ 0.47
COL7A1-208ENST00000470076 COL5A1P20908 1838 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-208ENST00000470076 LAMA5O15230 3695 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 KNTC1P50748 2209 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 TBC1D3DA0A087WVF3 549 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 TBC1D3IA0A087WXS9 549 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 TBC1D3EA0A087X179 549 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 TBC1D3KA0A087X1G2 549 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 A0A1W2PR77 199 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 TBC1D3FA6NER0 549 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-208ENST00000470076 GOLGA8CPA6NN73 597 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 TBC1D3LB9A6J9 549 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 ALOX15BO15296 676 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 YKT6O15498 198 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 SLC7A4O43246 635 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 LATO43561 262 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 PAGE1O75459 146 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 WNT1P04628 370 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 TBC1D3HP0C7X1 549 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 NUMBP49757 651 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 IL9RQ01113 521 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 C5orf22Q49AR2 442 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 ACCSLQ4AC99 568 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 TBC1D3GQ6DHY5 549 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 TBC1D3CQ6IPX1 549 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-208ENST00000470076 FAM71AQ8IYT1 594 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 TBC1D3Q8IZP1 549 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-208ENST00000470076 SERAC1Q96JX3 654 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 NDST4Q9H3R1 872 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 GDF3Q9NR23 364 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 TMEM51Q9NW97 253 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 FTSJ1Q9UET6 329 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 VPS28Q9UK41 221 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 STAP1Q9ULZ2 295 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 TBC1D30Q9Y2I9 924 aa17.98■□□□□ 0.47
COL7A1-208ENST00000470076 ATRXP46100 2492 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 PRKCSHP14314 528 aaPredicted RBP17.97■□□□□ 0.47
COL7A1-208ENST00000470076 NUDT1P36639 197 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 IRAK1P51617 712 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 CDH4P55283 916 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 DLG2Q15700 870 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 BRMS1LQ5PSV4 323 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 PRPF39Q86UA1 669 aaKnown RBP17.97■□□□□ 0.47
COL7A1-208ENST00000470076 TMEM35BQ8NCS4 154 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 OR52K2Q8NGK3 314 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 NPY6RQ99463 290 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 SIK2Q9H0K1 926 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 PDCL3Q9H2J4 239 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 WDCPQ9H6R7 721 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 PIGVQ9NUD9 493 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.97■□□□□ 0.47
COL7A1-208ENST00000470076 LHX6Q9UPM6 363 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 PAXBP1Q9Y5B6 917 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 OR51B4Q9Y5P0 310 aa17.97■□□□□ 0.47
COL7A1-208ENST00000470076 C1QTNF3-AMACRE9PGA6 284 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 TLR4O00206 839 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 WNT9AO14904 365 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 MCF2LO15068 1137 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 PLRG1O43660 514 aaKnown RBP17.96■□□□□ 0.47
COL7A1-208ENST00000470076 ITGAVP06756 1048 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 PNMA6AP0CW24 399 aaPredicted RBP17.96■□□□□ 0.47
COL7A1-208ENST00000470076 CDH5P33151 784 aaPredicted RBP17.96■□□□□ 0.47
COL7A1-208ENST00000470076 SCNN1AP37088 669 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 GGCXP38435 758 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 ARRB1P49407 418 aaPredicted RBP17.96■□□□□ 0.47
COL7A1-208ENST00000470076 CXCR3P49682 368 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 PPP2CBP62714 309 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 PPP2CAP67775 309 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 VWA3BQ502W6 1294 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 PRAMEF14Q5SWL7 426 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 OTUD1Q5VV17 481 aaPredicted RBP17.96■□□□□ 0.47
COL7A1-208ENST00000470076 NAPEPLDQ6IQ20 393 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 C14orf80Q86SX3 495 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 OXR1Q8N573 874 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 SH2D3CQ8N5H7 860 aa17.96■□□□□ 0.47
COL7A1-208ENST00000470076 NT5C3BQ969T7 300 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms