RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 LRRTM3Q86VH5 581 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 ACVR1CQ8NER5 493 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 SCAMP5Q8TAC9 235 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 ZSCAN18Q8TBC5 510 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-217ENST00000466159 SH3TC2Q8TF17 1288 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 MTG1Q9BT17 334 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-217ENST00000466159 SIK2Q9H0K1 926 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 RRAGCQ9HB90 399 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 TAGLN3Q9UI15 199 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 GIT1Q9Y2X7 761 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 SCN10AQ9Y5Y9 1956 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 TNPO2O14787 897 aaKnown RBP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 DUSP11O75319 330 aaKnown RBP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 RALBP11234 206 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 NMBRP28336 390 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 RPL9P32969 192 aaKnown RBP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 SERPINB6P35237 376 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 SPRP35270 261 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 ZNF157P51786 506 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 LIMK2P53671 638 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 IRF9Q00978 393 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 NAA25Q14CX7 972 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 RCN1Q15293 331 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 DBN1Q16643 649 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 INSCQ1MX18 579 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 INTS6LQ5JSJ4 861 aaKnown RBP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 VWA5B1Q5TIE3 1220 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 PM20D1Q6GTS8 502 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 RWDD4Q6NW29 188 aaKnown RBP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 FAM171BQ6P995 826 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 TMPRSS6Q8IU80 811 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 CNTD1Q8N815 330 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 DQX1Q8TE96 717 aaKnown RBP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 DPF3Q92784 378 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 CLPTM1LQ96KA5 538 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 TEKT5Q96M29 485 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 FAM161BQ96MY7 647 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 CHST12Q9NRB3 414 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 C20orf96Q9NUD7 363 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 RRN3Q9NYV6 651 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 TRHDEQ9UKU6 1024 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 F8W810 466 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 ODC1P11926 461 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 CPA3P15088 417 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 CD52P31358 61 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 MAGEA12P43365 314 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 PGFP49763 221 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 ERFP50548 548 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 PGGT1BP53609 377 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 PPP2R5DQ14738 602 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 ITPRIPL1Q6GPH6 555 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 DCLRE1AQ6PJP8 1040 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 CD300LGQ6UXG3 332 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 RSPH3Q86UC2 560 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 KCNMB4Q86W47 210 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 OR10T2Q8NGX3 314 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 SPATA22Q8NHS9 363 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 DTX3LQ8TDB6 740 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 NAF1Q96HR8 494 aaKnown RBP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 OXCT2Q9BYC2 517 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 BRD8Q9H0E9 1235 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 MMADHCQ9H3L0 296 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 IARS2Q9NSE4 1012 aaKnown RBP9.13□□□□□ -0.95
SYNE1-217ENST00000466159 PADI3Q9ULW8 664 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 INPP5FQ9Y2H2 1132 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 LRRC42Q9Y546 428 aa9.13□□□□□ -0.95
SYNE1-217ENST00000466159 A0A096LPK6 155 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 ERI2A8K979 691 aaKnown RBP9.12□□□□□ -0.95
SYNE1-217ENST00000466159 SPECC1L-ADORA2AF8WAN1 911 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 DFFAO00273 331 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 MTSS1O43312 755 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 LMNAP02545 664 aaKnown RBP9.12□□□□□ -0.95
SYNE1-217ENST00000466159 MYCNP04198 464 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-217ENST00000466159 ITGB1P05556 798 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 GRK2P25098 689 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 SERPINB8P50452 374 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 ABCE1P61221 599 aaKnown RBP9.12□□□□□ -0.95
SYNE1-217ENST00000466159 MGAT3Q09327 533 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 THOC5Q13769 683 aaKnown RBP9.12□□□□□ -0.95
SYNE1-217ENST00000466159 TRIM68Q6AZZ1 485 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 SERINC5Q86VE9 423 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 RASAL3Q86YV0 1011 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 ISL2Q96A47 359 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 MOCOSQ96EN8 888 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 ZNF419Q96HQ0 510 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-217ENST00000466159 ACBD6Q9BR61 282 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 THTPAQ9BU02 230 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 PLA2G4CQ9UP65 541 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 TDRD15B5MCY1 1934 aaKnown RBP9.12□□□□□ -0.95
SYNE1-217ENST00000466159 EIF4E1BA6NMX2 242 aaKnown RBP9.12□□□□□ -0.95
SYNE1-217ENST00000466159 MEI4A8MW99 385 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 ZNF195O14628 629 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 GPR182O15218 404 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 PSMG1O95456 288 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 MT-CYBP00156 380 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-217ENST00000466159 C2P06681 752 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 YY1P25490 414 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 THPOP40225 353 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms