RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 GRID2O43424 1007 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 ONECUT3O60422 494 aaPredicted RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 ATP6V1G1O75348 118 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 TRPA1O75762 1119 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 VAPBO95292 243 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 STAU1O95793 577 aaKnown RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 NFICP08651 508 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 HSPA1AP0DMV8 641 aaKnown RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 HSPA1BP0DMV9 641 aaKnown RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 ENO3P13929 434 aaPredicted RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 MPSTP25325 297 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 DNAJB1P25685 340 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 EPHA3P29320 983 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 HADHAP40939 763 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 DPP6P42658 865 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 ACADVLP49748 655 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 CSE1LP55060 971 aaKnown RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 PKNOX1P55347 436 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 SNX16P57768 344 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 SESN2P58004 480 aaPredicted RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 CRADDP78560 199 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 LAMTOR4Q0VGL1 99 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 DGKZQ13574 1117 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 IKBKEQ14164 716 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 KCTD21Q4G0X4 260 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 PPP6R3Q5H9R7 873 aaPredicted RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 ATF7IP2Q5U623 682 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 LIPMQ5VYY2 423 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 NCBP2-AS2Q69YL0 99 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 MAMDC4Q6UXC1 1216 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 ISLR2Q6UXK2 745 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 ZYG11AQ6WRX3 759 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 TRIM67Q6ZTA4 783 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 CMC1Q7Z7K0 106 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 ZDHHC17Q8IUH5 632 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 EXOC8Q8IYI6 725 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 PLD6Q8N2A8 252 aaKnown RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 ZBTB8BQ8NAP8 495 aaPredicted RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 SMYD1Q8NB12 490 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 COLGALT1Q8NBJ5 622 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 RIN3Q8TB24 985 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 LRRN4Q8WUT4 740 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 RSPH1Q8WYR4 309 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 CENPIQ92674 756 aaPredicted RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 KHSRPQ92945 711 aaKnown RBP eCLIP7.44□□□□□ -1.228e-12■■■■□ 25.6
USP48-206ENST00000464577 ZBED3Q96IU2 234 aaPredicted RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 WNK4Q96J92 1243 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 CSPG4P5Q96PW8 444 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 C11orf84Q9BUA3 381 aaPredicted RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 OSBPL6Q9BZF3 934 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 TSPYL2Q9H2G4 693 aaPredicted RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 FZD8Q9H461 694 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 ACAD9Q9H845 621 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 NMRAL1Q9HBL8 299 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 MRGBPQ9NV56 204 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 DTLQ9NZJ0 730 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 IGSF9Q9P2J2 1179 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 TSPAN16Q9UKR8 245 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 BLOC1S6Q9UL45 172 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 ADAMTS5Q9UNA0 930 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 FAF1Q9UNN5 650 aaPredicted RBP7.44□□□□□ -1.22
USP48-206ENST00000464577 CDYLQ9Y232 598 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 ANKRD6Q9Y2G4 727 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 KAT6AQ92794 2004 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 PHIPQ8WWQ0 1821 aa7.44□□□□□ -1.22
USP48-206ENST00000464577 C7orf72A4D263 438 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 SPDYE16A6NNV3 312 aaPredicted RBP7.43□□□□□ -1.22
USP48-206ENST00000464577 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.43□□□□□ -1.22
USP48-206ENST00000464577 NOP56O00567 594 aaKnown RBP7.43□□□□□ -1.22
USP48-206ENST00000464577 TIMM44O43615 452 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 CBFA2T3O75081 653 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 GRAP2O75791 330 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 CABYRO75952 493 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 CXCL8P10145 99 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 ERVK-10P10266 1014 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 CD1EP15812 388 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 SCNN1AP37088 669 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 GLUD2P49448 558 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 CSRP3P50461 194 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 NDST1P52848 882 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 TRAP1Q12931 704 aaKnown RBP7.43□□□□□ -1.22
USP48-206ENST00000464577 PDAP1Q13442 181 aaKnown RBP7.43□□□□□ -1.22
USP48-206ENST00000464577 SPIDRQ14159 915 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 PDK1Q15118 436 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 STXBP2Q15833 593 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 GOLGA7BQ2TAP0 167 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 PKDCCQ504Y2 493 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 MAP1SQ66K74 1059 aaPredicted RBP7.43□□□□□ -1.22
USP48-206ENST00000464577 RWDD4Q6NW29 188 aaKnown RBP7.43□□□□□ -1.22
USP48-206ENST00000464577 PAOXQ6QHF9 649 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 PATL1Q86TB9 770 aaKnown RBP7.43□□□□□ -1.22
USP48-206ENST00000464577 TMEM110Q86TL2 294 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 TTC30AQ86WT1 665 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 RNF168Q8IYW5 571 aaPredicted RBP7.43□□□□□ -1.22
USP48-206ENST00000464577 TNS4Q8IZW8 715 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 LZTR1Q8N653 840 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 RNF149Q8NC42 400 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 USP13Q92995 863 aaPredicted RBP7.43□□□□□ -1.22
USP48-206ENST00000464577 EME1Q96AY2 570 aa7.43□□□□□ -1.22
USP48-206ENST00000464577 RMND5BQ96G75 393 aaPredicted RBP7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms