RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 OAZ1P54368 228 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 RBMS2Q15434 407 aaKnown RBP4.39□□□□□ -1.71
USP40-209ENST00000452724 TAF12Q16514 161 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 GXYLT1Q4G148 440 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 RUNDC3AQ59EK9 446 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 C10orf25Q5T742 122 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 MTFR2Q6P444 385 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 SLC30A9Q6PML9 568 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 CYP26C1Q6V0L0 522 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 ANKRD13BQ86YJ7 626 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 KLBQ86Z14 1044 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 SCN4BQ8IWT1 228 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 VPS52Q8N1B4 723 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 FAM110DQ8TAY7 271 aaPredicted RBP4.39□□□□□ -1.71
USP40-209ENST00000452724 NSMCE1Q8WV22 266 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 PPM1EQ8WY54 764 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 IP6K1Q92551 441 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 NOD2Q9HC29 1040 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 KLQ9UEF7 1012 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 ZNF335Q9H4Z2 1342 aaPredicted RBP4.39□□□□□ -1.71
USP40-209ENST00000452724 DPPA5A6NC42 116 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 CXorf65A6NEN9 183 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 SAC3D1A6NKF1 404 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 SYN3O14994 580 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 MSI1O43347 362 aaKnown RBP4.38□□□□□ -1.71
USP40-209ENST00000452724 CCNT1O60563 726 aaKnown RBP4.38□□□□□ -1.71
USP40-209ENST00000452724 TLR2O60603 784 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 CNOT3O75175 753 aaKnown RBP4.38□□□□□ -1.71
USP40-209ENST00000452724 CNPP09543 421 aaKnown RBP4.38□□□□□ -1.71
USP40-209ENST00000452724 CBSLP0DN79 551 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 CYP19A1P11511 503 aaPredicted RBP4.38□□□□□ -1.71
USP40-209ENST00000452724 CKMT1AP12532 417 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 CYP4B1P13584 511 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 TNNT1P13805 278 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 GSTM2P28161 218 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 TKTP29401 623 aaKnown RBP4.38□□□□□ -1.71
USP40-209ENST00000452724 AVPR2P30518 371 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 CBSP35520 551 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 STAT1P42224 750 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 RPS6KA3P51812 740 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 SLC12A1Q13621 1099 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 GALNT3Q14435 633 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 ANKRD1Q15327 319 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 MIDNQ504T8 468 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 CYB5R4Q7L1T6 521 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 RNF144BQ7Z419 303 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 ANKRD44Q8N8A2 993 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 C2CD4CQ8TF44 421 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 KAT2AQ92830 837 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 UBXN10Q96LJ8 280 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 PPP1R10Q96QC0 940 aaKnown RBP4.38□□□□□ -1.71
USP40-209ENST00000452724 TWNKQ96RR1 684 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 TUBB6Q9BUF5 446 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 KRTAP1-5Q9BYS1 174 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 EBF3Q9H4W6 596 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 RIC8AQ9NPQ8 531 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 THAP1Q9NVV9 213 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 TMEM248Q9NWD8 314 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 SAGE1Q9NXZ1 904 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 RRN3Q9NYV6 651 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 UTS2RQ9UKP6 389 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 AGO2Q9UKV8 859 aaKnown RBP4.38□□□□□ -1.71
USP40-209ENST00000452724 ZMYM2Q9UBW7 1377 aa4.38□□□□□ -1.71
USP40-209ENST00000452724 KIR2DS5A0A0G2JLQ3 304 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 FAM90A10PA6NDY2 464 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 KIR2DS3K7RE56 304 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 RHODO00212 210 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 PRPF4O43172 522 aaKnown RBP eCLIP4.37□□□□□ -1.71
USP40-209ENST00000452724 CREB3O43889 395 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 METTL18O95568 372 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 WNT1P04628 370 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 CPA1P15085 419 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 TYK2P29597 1187 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 CIITAP33076 1130 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 MAPK9P45984 424 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 RHAGQ02094 409 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 ZBTB16Q05516 673 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 SEMA3AQ14563 771 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 CBWD5Q5RIA9 395 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 ISM2Q6H9L7 571 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 GALNT7Q86SF2 657 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 LRRTM4Q86VH4 590 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 BRSK2Q8IWQ3 736 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 NRACQ8N912 160 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 USP38Q8NB14 1042 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 CLMNQ96JQ2 1002 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.37□□□□□ -1.71
USP40-209ENST00000452724 ACAD9Q9H845 621 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 POT1Q9NUX5 634 aa4.37□□□□□ -1.71
USP40-209ENST00000452724 TRBV5-3A0A0A0MS03 114 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 TCRBV7S3A2A0A539 114 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 VWA3AA6NCI4 1184 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 TSPAN3O60637 253 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 OAZ2O95190 189 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 PRF1P14222 555 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 ARSAP15289 507 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 CHRNA5P30532 468 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 MVDP53602 400 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 KRTAP10-9P60411 292 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 UBE3AQ05086 875 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms