RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 AKAP11Q9UKA4 1901 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 SYN1P17600 705 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 ITGB6P18564 788 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 MSH3P20585 1137 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 CORO1AP31146 461 aaKnown RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 SGCGQ13326 291 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 XRCC4Q13426 336 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 EIF1ADQ8N9N8 165 aaKnown RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 PXYLP1Q8TE99 480 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 PTPN18Q99952 460 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 SPATA16Q9BXB7 569 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 VCX3AQ9NNX9 186 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 ZNF510Q9Y2H8 683 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 MYADML2A6NDP7 307 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 ZNF7P17097 686 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 VCLP18206 1134 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 CLNS1AP54105 237 aaKnown RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 OVGP1Q12889 678 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 TMCO4Q5TGY1 634 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 FBXL19Q6PCT2 694 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 USP45Q70EL2 814 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 EFL1Q7Z2Z2 1120 aaKnown RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 SERINC5Q86VE9 423 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 FUBP3Q96I24 572 aaKnown RBP eCLIP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 EXOC2Q96KP1 924 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 SUSD3Q96L08 255 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 UNKQ9C0B0 810 aaKnown RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 RGS18Q9NS28 235 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 IGKV6D-21A0A0A0MT36 114 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 C2CD4BA6NLJ0 364 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 SYCE1LA8MT33 242 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 GPD2P43304 727 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 ARL4DP49703 201 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 PCID2Q5JVF3 399 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 CST9Q5W186 159 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 SCARA3Q6AZY7 606 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 P2RY11Q96G91 374 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 KCTD15Q96SI1 283 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 MLPHQ9BV36 600 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 RIC8BQ9NVN3 520 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 PLK2Q9NYY3 685 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 RCOR3Q9P2K3 495 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 FBXL21Q9UKT6 434 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 EFR3BQ9Y2G0 817 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 RAD54BQ9Y620 910 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 TNRC6CQ9HCJ0 1690 aaKnown RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 PAPPAQ13219 1627 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 CACNA1SQ13698 1873 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 MEFVO15553 781 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 CLASP2O75122 1294 aaKnown RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 ERVK-10P10266 1014 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 CPA3P15088 417 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 DDX5P17844 614 aaKnown RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 MZF1P28698 734 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 ABCE1P61221 599 aaKnown RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 ZNF844Q08AG5 666 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 C6orf10Q5SRN2 563 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 ARMC6Q6NXE6 501 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 CRELD2Q6UXH1 353 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 TAC4Q86UU9 113 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 LRRC34Q8IZ02 419 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 C2orf15Q8WU43 125 aaKnown RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 ERP27Q96DN0 273 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 TWNKQ96RR1 684 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 OSGEPL1Q9H4B0 414 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 YJEFN3A6XGL0 299 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 E7ENQ6 273 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 CLDN11O75508 207 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 MPOP05164 745 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 COL6A1P12109 1028 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 CYBAP13498 195 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 MAPK8P45983 427 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 DRG2P55039 364 aaKnown RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 NOMO1Q15155 1222 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 DUPD1Q68J44 220 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 SERPINA13PQ6UXR4 307 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 RASGEF1CQ8N431 466 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 LRRC57Q8N9N7 239 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 UTP6Q9NYH9 597 aaKnown RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 H0Y3Z8 333 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 BUD23O43709 281 aaKnown RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 PDCD2Q16342 344 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 NEPROQ6NW34 567 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 OTOAQ7RTW8 1153 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 CRYBG2Q8N1P7 616 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 CCDC185Q8N715 623 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 SCAMP5Q8TAC9 235 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 KLHL5Q96PQ7 755 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 ATP13A3Q9H7F0 1226 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 TAS2R13Q9NYV9 303 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.54□□□□□ -1.2
SYNE1-213ENST00000448038 PHTF1Q9UMS5 762 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 CLCA2Q9UQC9 943 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 THSD7AQ9UPZ6 1657 aa7.54□□□□□ -1.2
SYNE1-213ENST00000448038 SLC38A8A6NNN8 435 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 E9PAM4 449 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 TM9SF1O15321 606 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 MAP3K13O43283 966 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 TBC1D4O60343 1298 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms