RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 C8orf58Q8NAV2 365 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 USP38Q8NB14 1042 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 EXOC6Q8TAG9 804 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 TMEM171Q8WVE6 324 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 C7orf26Q96N11 449 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 KRTAP2-2Q9BYT5 123 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 TUBA8Q9NY65 449 aaPredicted RBP4.56□□□□□ -1.68
VPS29-202ENST00000447578 ORC3Q9UBD5 711 aaPredicted RBP4.56□□□□□ -1.68
VPS29-202ENST00000447578 NDRG4Q9ULP0 352 aaKnown RBP4.56□□□□□ -1.68
VPS29-202ENST00000447578 ADAMTS5Q9UNA0 930 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 SYNMO15061 1565 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 NEURL4Q96JN8 1562 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 ASXL1Q8IXJ9 1541 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 FNDC1Q4ZHG4 1894 aaPredicted RBP4.56□□□□□ -1.68
VPS29-202ENST00000447578 MLH3Q9UHC1 1453 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 NPATQ14207 1427 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 PPRC1Q5VV67 1664 aaKnown RBP4.55□□□□□ -1.68
VPS29-202ENST00000447578 ABCA6Q8N139 1617 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 MAP3K4Q9Y6R4 1608 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 CYP2D7A0A087X1C5 515 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 FSD2A1L4K1 749 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 KIF28PB7ZC32 967 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 F5H0A9 414 aaPredicted RBP4.55□□□□□ -1.68
VPS29-202ENST00000447578 STX16-NPEPL1H3BU86 382 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 STX16O14662 325 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 TSPAN3O60637 253 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 RPP40O75818 363 aaKnown RBP4.55□□□□□ -1.68
VPS29-202ENST00000447578 LARGE1O95461 756 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 CER1O95813 267 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 TFRCP02786 760 aaKnown RBP4.55□□□□□ -1.68
VPS29-202ENST00000447578 CNPP09543 421 aaKnown RBP4.55□□□□□ -1.68
VPS29-202ENST00000447578 CPA1P15085 419 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 UQCRC1P31930 480 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 DCAF7P61962 342 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 GALNTL6Q49A17 601 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 Q4G0T1 1027 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 CTXN3Q4LDR2 81 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 CERCAMQ5T4B2 595 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 SFRP4Q6FHJ7 346 aaPredicted RBP4.55□□□□□ -1.68
VPS29-202ENST00000447578 RGS7BPQ6MZT1 257 aaPredicted RBP4.55□□□□□ -1.68
VPS29-202ENST00000447578 MIS18BP1Q6P0N0 1132 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 NEK10Q6ZWH5 1172 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.55□□□□□ -1.68
VPS29-202ENST00000447578 FSTL5Q8N475 847 aaPredicted RBP4.55□□□□□ -1.68
VPS29-202ENST00000447578 TDRD7Q8NHU6 1098 aaKnown RBP4.55□□□□□ -1.68
VPS29-202ENST00000447578 MBD3L2Q8NHZ7 208 aaPredicted RBP4.55□□□□□ -1.68
VPS29-202ENST00000447578 ADAMTS18Q8TE60 1221 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 ATG4AQ8WYN0 398 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 STAMQ92783 540 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 GLG1Q92896 1179 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 R3HDM4Q96D70 268 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 RITA1Q96K30 269 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 SDF4Q9BRK5 362 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 FSD1LQ9BXM9 530 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 AGXT2Q9BYV1 514 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 ABHD16BQ9H3Z7 469 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 CCDC134Q9H6E4 229 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 ACAD9Q9H845 621 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 LIN7CQ9NUP9 197 aaKnown RBP4.55□□□□□ -1.68
VPS29-202ENST00000447578 KLHL13Q9P2N7 655 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 BAG5Q9UL15 447 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 ASAP1Q9ULH1 1129 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 TBX20Q9UMR3 447 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 NFU1Q9UMS0 254 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 DNAJC16Q9Y2G8 782 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 CYP46A1Q9Y6A2 500 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 CFAP74Q9C0B2 1584 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 ZMYM4Q5VZL5 1548 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 KIDINS220Q9ULH0 1771 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 ERVK-7P63135 1459 aa4.55□□□□□ -1.68
VPS29-202ENST00000447578 NPC1L1Q9UHC9 1359 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 RPGRIP1LQ68CZ1 1315 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 WDR17Q8IZU2 1322 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 CENPJQ9HC77 1338 aaPredicted RBP4.54□□□□□ -1.68
VPS29-202ENST00000447578 FRMPD1Q5SYB0 1578 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 HECW2Q9P2P5 1572 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 DHHO43323 396 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 TIPRLO75663 272 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 EPHA3P29320 983 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 PPIFP30405 207 aaKnown RBP4.54□□□□□ -1.68
VPS29-202ENST00000447578 PGM1P36871 562 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 MCM2P49736 904 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 POLGP54098 1239 aaPredicted RBP4.54□□□□□ -1.68
VPS29-202ENST00000447578 PDCLQ13371 301 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 FHL3Q13643 280 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 RUSC1-AS1Q66K80 236 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 CRELD2Q6UXH1 353 aaPredicted RBP4.54□□□□□ -1.68
VPS29-202ENST00000447578 TRIM72Q6ZMU5 477 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 PARS2Q7L3T8 475 aaKnown RBP4.54□□□□□ -1.68
VPS29-202ENST00000447578 TRABD2AQ86V40 505 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 CHD1LQ86WJ1 897 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 C11orf44Q8N8P7 122 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 ANKRD52Q8NB46 1076 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 SPATA3Q8NHX4 192 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 SUN3Q8TAQ9 357 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 XAGE5Q8WWM1 108 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 RNF125Q96EQ8 232 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 HMCESQ96FZ2 354 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 TIGD1Q96MW7 591 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 NUDT16L1Q9BRJ7 211 aaKnown RBP4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms