RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 TSHZ1Q6ZSZ6 1077 aa8.69□□□□□ -1.02
PTPN3-204ENST00000446349 SRLQ86TD4 932 aa8.69□□□□□ -1.02
PTPN3-204ENST00000446349 ACTL9Q8TC94 416 aa8.69□□□□□ -1.02
PTPN3-204ENST00000446349 MTMR9Q96QG7 549 aa8.69□□□□□ -1.02
PTPN3-204ENST00000446349 PHPT1Q9NRX4 125 aaPredicted RBP8.69□□□□□ -1.02
PTPN3-204ENST00000446349 GNSP15586 552 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 RPA3P35244 121 aaPredicted RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 CASP4P49662 377 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 PMS1P54277 932 aaKnown RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 CSE1LP55060 971 aaKnown RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 BNC1Q01954 994 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 SMYD5Q6GMV2 418 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 ADAMTSL2Q86TH1 951 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 EDEM1Q92611 657 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 CCT7Q99832 543 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 DDX4Q9NQI0 724 aaKnown RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 SOHLH2Q9NX45 425 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 ADPRHL2Q9NX46 363 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 ZDHHC9Q9Y397 364 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 ENO2P09104 434 aaPredicted RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 NDUFA9Q16795 377 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 CDKAL1Q5VV42 579 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 FAM120BQ96EK7 910 aaKnown RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 TTLL2Q9BWV7 592 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 ULBP1Q9BZM6 244 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 POLMQ9NP87 494 aaPredicted RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 AP4S1Q9Y587 144 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 PCDHGB3Q9Y5G1 929 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 ATP4AP20648 1035 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 NUP107P57740 925 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 FSTL1Q12841 308 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 FAM187BQ17R55 369 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 SEZ6Q53EL9 994 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 USP49Q70CQ1 688 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 MILR1Q7Z6M3 343 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 C4orf33Q8N1A6 199 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 ACMSDQ8TDX5 336 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 PGLYRP2Q96PD5 576 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 MLXIPLQ9NP71 852 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 DNAAF2Q9NVR5 837 aaKnown RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 RNF103O00237 685 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 DAB1O75553 588 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 CCND1P24385 295 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 SCNN1GP51170 649 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 BLKP51451 505 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 RAD23BP54727 409 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 PGS1Q32NB8 556 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 PEX5LQ8IYB4 626 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 WFIKKN2Q8TEU8 576 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 PTCD2Q8WV60 388 aaKnown RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 SLITRK2Q9H156 845 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 ZDHHC6Q9H6R6 413 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 OR12D3Q9UGF7 316 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 SCAF8Q9UPN6 1271 aaKnown RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 LRRC72A6NJI9 287 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 PRNPP04156 253 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 RHBDL3P58872 404 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 NFYCQ13952 458 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 GALNTL6Q49A17 601 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 PAPD7Q5XG87 772 aaKnown RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 SRFBP1Q8NEF9 429 aaKnown RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 WDR48Q8TAF3 677 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 THTPAQ9BU02 230 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 BDH2Q9BUT1 245 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 MMADHCQ9H3L0 296 aaPredicted RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 TDRKHQ9Y2W6 561 aaKnown RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 HBS1LQ9Y450 684 aaKnown RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 PCDHGA4Q9Y5G9 962 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 A0A0A0MRY4 1105 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 SAC3D1A6NKF1 404 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 TOB1P50616 345 aaPredicted RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 PNLIPRP1P54315 467 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 BTKQ06187 659 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 FAM98BQ52LJ0 330 aaKnown RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 OLFML2BQ68BL8 750 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 CASKIN2Q8WXE0 1202 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 SPATA13Q96N96 652 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 OLFM1Q99784 485 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 DUSP16Q9BY84 665 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 C3orf14Q9HBI5 128 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 CCZ1BP86790 482 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 CCZ1P86791 482 aaPredicted RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 ZNF614Q8N883 585 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 CYGBQ8WWM9 190 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 THOC1Q96FV9 657 aaKnown RBP8.68□□□□□ -1.02
PTPN3-204ENST00000446349 BTN2A3PQ96KV6 586 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 DEPDC7Q96QD5 511 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 BBS2Q9BXC9 721 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 SMPD4Q9NXE4 827 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 DEC1Q9P2X7 70 aa8.68□□□□□ -1.02
PTPN3-204ENST00000446349 DNALI1O14645 258 aaPredicted RBP8.67□□□□□ -1.02
PTPN3-204ENST00000446349 B4GALT4O60513 344 aa8.67□□□□□ -1.02
PTPN3-204ENST00000446349 KRT75O95678 551 aa8.67□□□□□ -1.02
PTPN3-204ENST00000446349 TRUB2O95900 331 aaKnown RBP8.67□□□□□ -1.02
PTPN3-204ENST00000446349 SERPINE1P05121 402 aa8.67□□□□□ -1.02
PTPN3-204ENST00000446349 FAM163BP0C2L3 166 aa8.67□□□□□ -1.02
PTPN3-204ENST00000446349 SLC35G4P0C7Q5 338 aa8.67□□□□□ -1.02
PTPN3-204ENST00000446349 CALB2P22676 271 aa8.67□□□□□ -1.02
PTPN3-204ENST00000446349 PPIBP23284 216 aaKnown RBP8.67□□□□□ -1.02
PTPN3-204ENST00000446349 GLRA2P23416 452 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms