RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 TKTP29401 623 aaKnown RBP16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 CCND3P30281 292 aaPredicted RBP16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 EPHB1P54762 984 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 PITX1P78337 314 aaPredicted RBP16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 EP400NLQ6ZTU2 488 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 ACAD11Q709F0 780 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 MFN1Q8IWA4 741 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 ZFAND2BQ8WV99 257 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 NT5C3BQ969T7 300 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 SH3GL3Q99963 347 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 GORASP1Q9BQQ3 440 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 KATNAL1Q9BW62 490 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 CDH19Q9H159 772 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 ADAMTS10Q9H324 1103 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 LRRC40Q9H9A6 602 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 TMPRSS4Q9NRS4 437 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 GDAP2Q9NXN4 497 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 UBQLN1Q9UMX0 589 aaKnown RBP16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 CDY2AQ9Y6F7 541 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 CDY1Q9Y6F8 540 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 MBLAC1A4D2B0 266 aaPredicted RBP16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 TMEM114B3SHH9 223 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 DCLK1O15075 740 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 SPTLC1O15269 473 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 CYP2C9P11712 490 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 SPRP35270 261 aaPredicted RBP16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 ADAM17P78536 824 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 ROR2Q01974 943 aaKnown RBP16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 KIZQ2M2Z5 673 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 CWF19L1Q69YN2 538 aaKnown RBP16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 EPGNQ6UW88 154 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 LIMS2Q7Z4I7 341 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 CLEC14AQ86T13 490 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 PIGZQ86VD9 579 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 PLD6Q8N2A8 252 aaKnown RBP16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 PHTF2Q8N3S3 785 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 CCNYQ8ND76 341 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 NDRG1Q92597 394 aaKnown RBP16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 TUBGCP5Q96RT8 1024 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 NPY6RQ99463 290 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 SNX25Q9H3E2 840 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 EBF3Q9H4W6 596 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 GINS2Q9Y248 185 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 HES2Q9Y543 173 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 TSC2P49815 1807 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 SCN10AQ9Y5Y9 1956 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 TREHO43280 583 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 ZNF189O75820 626 aaPredicted RBP16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 RECQL4O94761 1208 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 SORBS2O94875 1100 aaKnown RBP16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 NUMBP49757 651 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 XIAPP98170 497 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 ADIGQ0VDE8 80 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 ASPHQ12797 758 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 FSCBQ5H9T9 825 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 ZNF618Q5T7W0 954 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 FRMD7Q6ZUT3 714 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 TMEM135Q86UB9 458 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 DEFB107AQ8IZN7 70 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 NME8Q8N427 588 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 OR52K1Q8NGK4 314 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 SLC26A7Q8TE54 656 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 FAM149B1Q96BN6 582 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 ZNF669Q96BR6 464 aaPredicted RBP16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 ZNF560Q96MR9 790 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 GBP5Q96PP8 586 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 OXCT2Q9BYC2 517 aaPredicted RBP16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 SHCBP1LQ9BZQ2 653 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 VCX3BQ9H321 246 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 NXF3Q9H4D5 531 aaKnown RBP16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 ADAMTS6Q9UKP5 1117 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 POMPQ9Y244 141 aa16.74■□□□□ 0.27
CLCNKA-203ENST00000439316 E2F8A0AVK6 867 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 KPNA7A9QM74 516 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 G3V2L1 256 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 ZBTB14O43829 449 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 CREB3O43889 395 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 RNASEH1O60930 286 aaKnown RBP16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 AP2A1O95782 977 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 CD4P01730 458 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 MPOP05164 745 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 COX4I1P13073 169 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 NCF2P19878 526 aaPredicted RBP16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 PTPN3P26045 913 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 HOXD10P28358 340 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 NOS2P35228 1153 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 OLIG2Q13516 323 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 DCAF6Q58WW2 860 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 CXCL17Q6UXB2 119 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 NAPRTQ6XQN6 538 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 CATSPER4Q7RTX7 472 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 STRA8Q7Z7C7 330 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 TP53INP2Q8IXH6 220 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 FBXW8Q8N3Y1 598 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 ZNF781Q8N8C0 355 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 PGLYRP2Q96PD5 576 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 DDX50Q9BQ39 737 aaKnown RBP16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 COG4Q9H9E3 785 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 CYP4F11Q9HBI6 524 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 272.2 ms