RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 LRRC57Q8N9N7 239 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 ZNF592Q92610 1267 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 NAPGQ99747 312 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-208ENST00000437607 BBS2Q9BXC9 721 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 TRIM7Q9C029 511 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 POPDC2Q9HBU9 364 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 TLR8Q9NR97 1041 aaKnown RBP12.56□□□□□ -0.4
PTPRF-208ENST00000437607 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.56□□□□□ -0.47e-6■□□□□ 8.6
PTPRF-208ENST00000437607 NUDT5Q9UKK9 219 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 AMFRQ9UKV5 643 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 SCML2Q9UQR0 700 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 USP3Q9Y6I4 520 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 ACACAQ13085 2346 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 GOLGA4Q13439 2230 aaKnown RBP12.56□□□□□ -0.4
PTPRF-208ENST00000437607 FAM221BA6H8Z2 402 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 C2CD4BA6NLJ0 364 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 OPHN1O60890 802 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 PDGFRAP16234 1089 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 RFC1P35251 1148 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-208ENST00000437607 ATP5C1P36542 298 aaKnown RBP12.55□□□□□ -0.4
PTPRF-208ENST00000437607 SLC1A1P43005 524 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 SSR1P43307 286 aaKnown RBP12.55□□□□□ -0.4
PTPRF-208ENST00000437607 SULT1E1P49888 294 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 ZNF143P52747 638 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-208ENST00000437607 YWHAGP61981 247 aaKnown RBP eCLIP12.55□□□□□ -0.4
PTPRF-208ENST00000437607 YWHAZP63104 245 aaKnown RBP12.55□□□□□ -0.4
PTPRF-208ENST00000437607 PM20D1Q6GTS8 502 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 Q6ZNB5 142 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 ARCQ7LC44 396 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 CHPFQ8IZ52 775 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 CHCHD4Q8N4Q1 142 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 NIPA2Q8N8Q9 360 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 RXFP2Q8WXD0 754 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 ZNF419Q96HQ0 510 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-208ENST00000437607 MRGPRX1Q96LB2 322 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 HSPA12BQ96MM6 686 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 CAMK1GQ96NX5 476 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 SLC2A13Q96QE2 648 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 XPO6Q96QU8 1125 aaKnown RBP12.55□□□□□ -0.4
PTPRF-208ENST00000437607 WDR24Q96S15 920 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 CNPY3Q9BT09 278 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 NACA2Q9H009 215 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 GOLPH3Q9H4A6 298 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 DNAAF2Q9NVR5 837 aaKnown RBP12.55□□□□□ -0.4
PTPRF-208ENST00000437607 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.55□□□□□ -0.4
PTPRF-208ENST00000437607 CACNA2D2Q9NY47 1150 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 RRN3Q9NYV6 651 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 TMEM59LQ9UK28 342 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 FBXO10Q9UK96 956 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 JRKLQ9Y4A0 524 aa12.55□□□□□ -0.4
PTPRF-208ENST00000437607 DOCK9Q9BZ29 2069 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 A0A1W2PQH9 124 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 YJEFN3A6XGL0 299 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 MIF4GDA9UHW6 222 aaKnown RBP12.54□□□□□ -0.4
PTPRF-208ENST00000437607 E7ENQ6 273 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 TAF4O00268 1085 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 ZNF217O75362 1048 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 RNF8O76064 485 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 NCAM1P13591 858 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 COMTP21964 271 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 GJC1P36383 396 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 MATKP42679 507 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 PTPN9P43378 593 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 DGKGP49619 791 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 PSEN1P49768 467 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 DNA2P51530 1060 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 ATXN3P54252 364 aaPredicted RBP12.54□□□□□ -0.4
PTPRF-208ENST00000437607 TAF5Q15542 800 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 CDO1Q16878 200 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 DCAF6Q58WW2 860 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 NUDT18Q6ZVK8 323 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 RSRC2Q7L4I2 434 aaKnown RBP12.54□□□□□ -0.4
PTPRF-208ENST00000437607 BHLHA9Q7RTU4 235 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 RAB44Q7Z6P3 723 aaPredicted RBP12.54□□□□□ -0.4
PTPRF-208ENST00000437607 SCD5Q86SK9 330 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 DEFB106AQ8N104 65 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 HDDC3Q8N4P3 179 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 UBL4BQ8N7F7 174 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 KIF18AQ8NI77 898 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 RNF139Q8WU17 664 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 NDRG1Q92597 394 aaKnown RBP12.54□□□□□ -0.4
PTPRF-208ENST00000437607 CFAP57Q96MR6 1250 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 NCAPGQ9BPX3 1015 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 FAM204AQ9H8W3 233 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 PLK2Q9NYY3 685 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 MYLKQ15746 1914 aa12.54□□□□□ -0.4
PTPRF-208ENST00000437607 APC2O95996 2303 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 GFRA2O00451 464 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 PSTPIP1O43586 416 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 SH3BP5O60239 455 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 STC2O76061 302 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 KLKB1P03952 638 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 RALAP11233 206 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 RARGP13631 454 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 MAOBP27338 520 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 NOS2P35228 1153 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 ATP11AP98196 1134 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 OGDHQ02218 1023 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 COL9A2Q14055 689 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-208ENST00000437607 ACAP1Q15027 740 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms