RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 WDR60Q8WVS4 1066 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 QKIQ96PU8 341 aaKnown RBP eCLIP9.69□□□□□ -0.866e-15■■■■□ 22.1
CUX1-206ENST00000437600 NUDCD1Q96RS6 583 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 TSPAN18Q96SJ8 248 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 PRDM5Q9NQX1 630 aaPredicted RBP9.69□□□□□ -0.86
CUX1-206ENST00000437600 TXLNGQ9NUQ3 528 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 NDFIP2Q9NV92 336 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 TAS2R1Q9NYW7 299 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 TMEM216Q9P0N5 145 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 LOC100653049A0A140TA62 436 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 H3BRJ5 948 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 GYG2O15488 501 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 KRT34O76011 436 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 HAUS5O94927 633 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 EN2P19622 333 aaPredicted RBP9.69□□□□□ -0.86
CUX1-206ENST00000437600 ITGB8P26012 769 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 TYK2P29597 1187 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 ARRB2P32121 409 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 SLC8A1P32418 973 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 CCR10P46092 362 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 CDK7P50613 346 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 ARPP19P56211 112 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 RASA2Q15283 850 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 FASTKD1Q53R41 847 aaKnown RBP9.69□□□□□ -0.86
CUX1-206ENST00000437600 CLLU1OSQ5K130 101 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 TLDC1Q6P9B6 456 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 CD300LGQ6UXG3 332 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 SLC39A5Q6ZMH5 540 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 SLC25A41Q8N5S1 370 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 ALKBH8Q96BT7 664 aaKnown RBP9.69□□□□□ -0.86
CUX1-206ENST00000437600 RSRC1Q96IZ7 334 aaKnown RBP9.69□□□□□ -0.86
CUX1-206ENST00000437600 OLFM3Q96PB7 478 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 WDCPQ9H6R7 721 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 WDR6Q9NNW5 1121 aaKnown RBP9.69□□□□□ -0.86
CUX1-206ENST00000437600 PNPOQ9NVS9 261 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 MOCS1Q9NZB8 636 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 ZFATQ9P243 1243 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 PCDHA11Q9Y5I1 949 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 TDRD15B5MCY1 1934 aaKnown RBP9.69□□□□□ -0.86
CUX1-206ENST00000437600 VCANP13611 3396 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 DFFAO00273 331 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 ZMPSTE24O75844 475 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 SORBS2O94875 1100 aaKnown RBP9.69□□□□□ -0.86
CUX1-206ENST00000437600 ESRRAP11474 423 aaPredicted RBP9.69□□□□□ -0.86
CUX1-206ENST00000437600 AVPR1AP37288 418 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 NR2C2P49116 596 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 SNX16P57768 344 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 TPI1P60174 286 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 IRF9Q00978 393 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 SEMA5AQ13591 1074 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 DSC3Q14574 896 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 LRRC26Q2I0M4 334 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 IL31Q6EBC2 164 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 OVOS1Q6IE37 1185 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 STRADAQ7RTN6 431 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 ZDHHC17Q8IUH5 632 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 C10orf107Q8IVU9 208 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 SCN4BQ8IWT1 228 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 SLC43A3Q8NBI5 491 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 DBF4BQ8NFT6 615 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 ZNF669Q96BR6 464 aaPredicted RBP9.69□□□□□ -0.86
CUX1-206ENST00000437600 COLEC11Q9BWP8 271 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 PACSIN3Q9UKS6 424 aa9.69□□□□□ -0.86
CUX1-206ENST00000437600 FAM159BA6NKW6 160 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 MEI4A8MW99 385 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 B2RBV5 119 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 SOAT2O75908 522 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 GSRP00390 522 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 CD68P34810 354 aaPredicted RBP9.68□□□□□ -0.86
CUX1-206ENST00000437600 MAGEA3P43357 314 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 ACADSBP45954 432 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 GLRBP48167 497 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 LHX1P48742 406 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 USP4Q13107 963 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 TUSC3Q13454 348 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 LGSNQ5TDP6 509 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 PACS1Q6VY07 963 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 LRRC8DQ7L1W4 858 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 SPDL1Q96EA4 605 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 GORASP1Q9BQQ3 440 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 LRMDAQ9H2I8 198 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 ABI2Q9NYB9 513 aaPredicted RBP9.68□□□□□ -0.86
CUX1-206ENST00000437600 MPP6Q9NZW5 540 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 EME2A4GXA9 379 aaPredicted RBP9.68□□□□□ -0.86
CUX1-206ENST00000437600 TRDMT1O14717 391 aaKnown RBP9.68□□□□□ -0.86
CUX1-206ENST00000437600 LRIG2O94898 1065 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 PTPN3P26045 913 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 GPR15P49685 360 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 DAOAP59103 153 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 KPNB1Q14974 876 aaKnown RBP9.68□□□□□ -0.86
CUX1-206ENST00000437600 MRPL10Q7Z7H8 261 aaKnown RBP9.68□□□□□ -0.86
CUX1-206ENST00000437600 MCUQ8NE86 351 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 RSPH1Q8WYR4 309 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 MCOLN1Q9GZU1 580 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 HIPK3Q9H422 1215 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 IRAK4Q9NWZ3 460 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 TXNDC16Q9P2K2 825 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 FETUBQ9UGM5 382 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 EMCNQ9ULC0 261 aa9.68□□□□□ -0.86
CUX1-206ENST00000437600 STAP1Q9ULZ2 295 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms