RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CCNG2Q16589 344 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 AADACL2Q6P093 401 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 ZC3H18Q86VM9 953 aaKnown RBP10.34□□□□□ -0.75
CD44-207ENST00000425428 NLRP14Q86W24 1093 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 RALGPS2Q86X27 583 aaPredicted RBP10.34□□□□□ -0.75
CD44-207ENST00000425428 CCDC89Q8N998 374 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 CELF6Q96J87 481 aaKnown RBP10.34□□□□□ -0.75
CD44-207ENST00000425428 LRRC3BQ96PB8 259 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 PNKPQ96T60 521 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 MAGEB5Q9BZ81 275 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 PRDM6Q9NQX0 595 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 ABCB8Q9NUT2 735 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 GTSE1Q9NYZ3 720 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 GGA2Q9UJY4 613 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 MRPS17Q9Y2R5 130 aaKnown RBP10.34□□□□□ -0.75
CD44-207ENST00000425428 MRFAP1Q9Y605 127 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 TBC1D3BA6NDS4 549 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 SGK1O00141 431 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 CBX4O00257 560 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 MFSD11O43934 449 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 ASGR2P07307 311 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 RBP3P10745 1247 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 PABPC1P11940 636 aaKnown RBP10.34□□□□□ -0.75
CD44-207ENST00000425428 CCNCP24863 283 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 STIP1P31948 543 aaKnown RBP10.34□□□□□ -0.75
CD44-207ENST00000425428 GJA4P35212 333 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 GARSP41250 739 aaKnown RBP10.34□□□□□ -0.75
CD44-207ENST00000425428 RENBPP51606 427 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 ZP2Q05996 745 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 TNK2Q07912 1038 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 SLC20A2Q08357 652 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 GRSF1Q12849 480 aaKnown RBP eCLIP10.34□□□□□ -0.75
CD44-207ENST00000425428 EIF4HQ15056 248 aaKnown RBP10.34□□□□□ -0.75
CD44-207ENST00000425428 MAATS1Q7Z4T9 603 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 CREG2Q8IUH2 290 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 UBALD2Q8IYN6 164 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 PQLC3Q8N755 202 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 TTC8Q8TAM2 541 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 ACTL9Q8TC94 416 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 CCHCR1Q8TD31 782 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 CASKIN2Q8WXE0 1202 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 P2RY13Q9BPV8 354 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 AP1M1Q9BXS5 423 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 TCF20Q9UGU0 1960 aaKnown RBP10.34□□□□□ -0.75
CD44-207ENST00000425428 GOLGA6CA6NDK9 693 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 GOLGA6BA6NDN3 693 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 NDC80O14777 642 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 PHF2O75151 1096 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 TULP3O75386 442 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 GOLGA6DP0CG33 693 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 CSKP41240 450 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 GRIA2P42262 883 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 FNTAP49354 379 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 PAPOLAP51003 745 aaKnown RBP10.33□□□□□ -0.76
CD44-207ENST00000425428 GBE1Q04446 702 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 IL10RBQ08334 325 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 GALNT2Q10471 571 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 KLF1Q13351 362 aaPredicted RBP10.33□□□□□ -0.76
CD44-207ENST00000425428 SNX1Q13596 522 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 RFTN1Q14699 578 aaPredicted RBP10.33□□□□□ -0.76
CD44-207ENST00000425428 NOMO1Q15155 1222 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 SLC45A4Q5BKX6 768 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 SDE2Q6IQ49 451 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 C4orf22Q6V702 233 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 CCDC13Q8IYE1 715 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 DCAF4L2Q8NA75 395 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 ATL2Q8NHH9 583 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 RIN3Q8TB24 985 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 ARHGEF2Q92974 986 aaKnown RBP10.33□□□□□ -0.76
CD44-207ENST00000425428 HDAC11Q96DB2 347 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 ASIC4Q96FT7 647 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 PPP1R2P1Q96PQ5 205 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 VAT1Q99536 393 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 FEM1AQ9BSK4 669 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 RPP25Q9BUL9 199 aaKnown RBP10.33□□□□□ -0.76
CD44-207ENST00000425428 CIPCQ9C0C6 399 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 SLC39A8Q9C0K1 460 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 HPS4Q9NQG7 708 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 SLC2A4RGQ9NR83 387 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 GOLGA6AQ9NYA3 693 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 DTLQ9NZJ0 730 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 SEPT10Q9P0V9 454 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 IPO11Q9UI26 975 aaKnown RBP10.33□□□□□ -0.76
CD44-207ENST00000425428 SLC27A6Q9Y2P4 619 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 FARP1Q9Y4F1 1045 aaPredicted RBP10.33□□□□□ -0.76
CD44-207ENST00000425428 PIAS3Q9Y6X2 628 aa10.33□□□□□ -0.76
CD44-207ENST00000425428 CXorf51AA0A1B0GTR3 108 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 GFRA2O00451 464 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 NPC1O15118 1278 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 ZBTB24O43167 697 aaPredicted RBP10.32□□□□□ -0.76
CD44-207ENST00000425428 KDELR3O43731 214 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 DRD1P21728 446 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 RECQLP46063 649 aaPredicted RBP10.32□□□□□ -0.76
CD44-207ENST00000425428 SGSHP51688 502 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 PLK1P53350 603 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 LMAN2Q12907 356 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 SERINC3Q13530 473 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 ZNF235Q14590 738 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 PPP1R7Q15435 360 aa10.32□□□□□ -0.76
CD44-207ENST00000425428 PLEKHG6Q3KR16 790 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms