RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 KLHL41O60662 606 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 BAIAP3O94812 1187 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CYP2F1P24903 491 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 GPAT3Q53EU6 434 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ARSJQ5FYB0 599 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-204ENST00000423058 MZT2BQ6NZ67 158 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 GPR135Q8IZ08 494 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 FIG4Q92562 907 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CLIP3Q96DZ5 547 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 SYT15Q9BQS2 421 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 POLR1EQ9GZS1 481 aaKnown RBP6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ZDHHC4Q9NPG8 344 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 AGPAT3Q9NRZ7 376 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ARL15Q9NXU5 204 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ALG6Q9Y672 507 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 DISP1Q96F81 1524 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 STX16-NPEPL1H3BU86 382 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 STX16O14662 325 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 KMOO15229 486 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 TLL1O43897 1013 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CCDC166P0CW27 439 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 GYS1P13807 737 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CALB2P22676 271 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CDH8P55286 799 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 NAB1Q13506 487 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ARID5BQ14865 1188 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 RAET1GQ6H3X3 334 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF621Q6ZSS3 439 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 EIF3MQ7L2H7 374 aaKnown RBP6.97□□□□□ -1.29
SCN1A-204ENST00000423058 RASGRP2Q7LDG7 609 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 GALNT7Q86SF2 657 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ADHFE1Q8IWW8 467 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 SCUBE1Q8IWY4 988 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 NSMCE2Q96MF7 247 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 NDUFAF1Q9Y375 327 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 UBDO15205 165 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 EIF3HO15372 352 aaKnown RBP eCLIP6.97□□□□□ -1.292e-7■■■■□ 19.6
SCN1A-204ENST00000423058 PPP1R37O75864 691 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CYB5AP00167 134 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 RAB25P57735 213 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 POU6F1Q14863 301 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 COLEC12Q5KU26 742 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 MOXD1Q6UVY6 613 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 OAFQ86UD1 273 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 COL23A1Q86Y22 540 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-204ENST00000423058 REM2Q8IYK8 340 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-204ENST00000423058 SGF29Q96ES7 293 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 TBL1YQ9BQ87 522 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 FAM192AQ9GZU8 254 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 COLEC10Q9Y6Z7 277 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 MYH13Q9UKX3 1938 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 UBE2QL1A1L167 161 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 DNTTP04053 509 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 RPL4P36578 427 aaKnown RBP6.97□□□□□ -1.29
SCN1A-204ENST00000423058 NR1D2Q14995 579 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 IQSEC1Q6DN90 963 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 SERPINA13PQ6UXR4 307 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 TXNRD3Q86VQ6 643 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 PROSER1Q86XN7 944 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 LGI2Q8N0V4 545 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 COLGALT1Q8NBJ5 622 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 PHC3Q8NDX5 983 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF473Q8WTR7 871 aaKnown RBP6.97□□□□□ -1.29
SCN1A-204ENST00000423058 EEF1AKMT1Q8WVE0 214 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CAPSLQ8WWF8 208 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CCT8L2Q96SF2 557 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 LMAN2LQ9H0V9 348 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CLN6Q9NWW5 311 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 SLC12A4Q9UP95 1085 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 INVSQ9Y283 1065 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 SLC9A8Q9Y2E8 581 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 SNX13Q9Y5W8 968 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 SNUPNO95149 360 aaKnown RBP6.96□□□□□ -1.29
SCN1A-204ENST00000423058 MMP13P45452 471 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 FOXO4P98177 505 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 CSHL1Q14406 222 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 TCEAL6Q6IPX3 200 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 ZFP1Q6P2D0 407 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 USP50Q70EL3 339 aaPredicted RBP6.96□□□□□ -1.29
SCN1A-204ENST00000423058 ARID3BQ8IVW6 561 aaPredicted RBP6.96□□□□□ -1.29
SCN1A-204ENST00000423058 ZKSCAN4Q969J2 545 aaPredicted RBP6.96□□□□□ -1.29
SCN1A-204ENST00000423058 REEP1Q9H902 201 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 LYVE1Q9Y5Y7 322 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 TSPAN3O60637 253 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 SIN3BO75182 1162 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 JCHAINP01591 159 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 GHRP10912 638 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 GLRBP48167 497 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 VBP1P61758 197 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 NDUFA9Q16795 377 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 INO80DQ53TQ3 878 aaPredicted RBP6.96□□□□□ -1.29
SCN1A-204ENST00000423058 XKR4Q5GH76 650 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 PRAMEF18Q5VWM3 479 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 OR8D1Q8WZ84 308 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 ITCHQ96J02 903 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 FAM111AQ96PZ2 611 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 LRRC1Q9BTT6 524 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 RHBGQ9H310 441 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 GTF3C4Q9UKN8 822 aa6.96□□□□□ -1.29
SCN1A-204ENST00000423058 ABCC3O15438 1527 aa6.96□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms