RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 STON2Q8WXE9 905 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 TFAP2CQ92754 450 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 ITPKCQ96DU7 683 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 TMA16Q96EY4 203 aaKnown RBP10.92□□□□□ -0.66
USP54-204ENST00000422491 PIWIL1Q96J94 861 aaKnown RBP10.92□□□□□ -0.66
USP54-204ENST00000422491 NPAS2Q99743 824 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 CIB1Q99828 191 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 PORCNQ9H237 461 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 ANLNQ9NQW6 1124 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 MAP3K20Q9NYL2 800 aaKnown RBP10.92□□□□□ -0.66
USP54-204ENST00000422491 TANC1Q9C0D5 1861 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 PTPRFP10586 1907 aa10.92□□□□□ -0.66
USP54-204ENST00000422491 TRIM64BA6NI03 449 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 KPNA7A9QM74 516 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 H3BMQ9 156 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 XPOTO43592 962 aaKnown RBP10.91□□□□□ -0.66
USP54-204ENST00000422491 ZBTB11O95625 1053 aaPredicted RBP10.91□□□□□ -0.66
USP54-204ENST00000422491 PSAPP07602 524 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 PDGFRAP16234 1089 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 KCNA2P16389 499 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 PGAM1P18669 254 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 C21orf59P57076 290 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 TRPC3Q13507 836 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 DUOXA2Q1HG44 320 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 CCDC92Q53HC0 331 aaPredicted RBP10.91□□□□□ -0.66
USP54-204ENST00000422491 OGFOD2Q6N063 350 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 CLEC14AQ86T13 490 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 DCLK2Q8N568 766 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 DDHD1Q8NEL9 900 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 CHPT1Q8WUD6 406 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 MOCOSQ96EN8 888 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 DUS3LQ96G46 650 aaKnown RBP10.91□□□□□ -0.66
USP54-204ENST00000422491 PRMT6Q96LA8 375 aaPredicted RBP10.91□□□□□ -0.66
USP54-204ENST00000422491 COG8Q96MW5 612 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 PCDHAC1Q9H158 963 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 TRPV6Q9H1D0 765 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 RMI1Q9H9A7 625 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 MORF4L1Q9UBU8 362 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 PTBP2Q9UKA9 531 aaKnown RBP10.91□□□□□ -0.66
USP54-204ENST00000422491 TMED5Q9Y3A6 229 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 RAP2CQ9Y3L5 183 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 POLRMTO00411 1230 aaKnown RBP10.91□□□□□ -0.66
USP54-204ENST00000422491 H2AFYO75367 372 aaKnown RBP10.91□□□□□ -0.66
USP54-204ENST00000422491 MICAL2O94851 1124 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 MGAT1P26572 445 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 GPD2P43304 727 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 RPL14P50914 215 aaKnown RBP10.91□□□□□ -0.66
USP54-204ENST00000422491 GBE1Q04446 702 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 SMYD5Q6GMV2 418 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 HERC6Q8IVU3 1022 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 ZNF420Q8TAQ5 688 aaPredicted RBP10.91□□□□□ -0.66
USP54-204ENST00000422491 TOP1MTQ969P6 601 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 THAP11Q96EK4 314 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 TWNKQ96RR1 684 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 GPATCH1Q9BRR8 931 aaKnown RBP10.91□□□□□ -0.66
USP54-204ENST00000422491 ZNF670Q9BS34 389 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 RAVER2Q9HCJ3 691 aaKnown RBP10.91□□□□□ -0.66
USP54-204ENST00000422491 C20orf96Q9NUD7 363 aaPredicted RBP10.91□□□□□ -0.66
USP54-204ENST00000422491 PIH1D1Q9NWS0 290 aaKnown RBP10.91□□□□□ -0.66
USP54-204ENST00000422491 PCDHGA7Q9Y5G6 932 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 SNX13Q9Y5W8 968 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 FER1L6Q2WGJ9 1857 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 CROCCQ5TZA2 2017 aa10.91□□□□□ -0.66
USP54-204ENST00000422491 DOCK5Q9H7D0 1870 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 TCRBV3S1A0A5B6 114 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 BAIAP3O94812 1187 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 STAMBPO95630 424 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 JUNP05412 331 aaKnown RBP10.9□□□□□ -0.66
USP54-204ENST00000422491 ERVK-10P10266 1014 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 CD247P20963 164 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 DCKP27707 260 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 ARL2P36404 184 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 CCR10P46092 362 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 HK2P52789 917 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 IRF9Q00978 393 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 BOLA3Q53S33 107 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 XKR5Q6UX68 686 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 TANKQ92844 425 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 MARK4Q96L34 752 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 CPNE1Q99829 537 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 SNRNP25Q9BV90 132 aaKnown RBP10.9□□□□□ -0.66
USP54-204ENST00000422491 NPLQ9BXD5 320 aaPredicted RBP10.9□□□□□ -0.66
USP54-204ENST00000422491 DRC3Q9H069 523 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 ARMC7Q9H6L4 198 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 CXorf21Q9HAI6 301 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 OXSMQ9NWU1 459 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 NXF1Q9UBU9 619 aaKnown RBP10.9□□□□□ -0.66
USP54-204ENST00000422491 HMGXB4Q9UGU5 601 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 COPG1Q9Y678 874 aaKnown RBP10.9□□□□□ -0.66
USP54-204ENST00000422491 LTBP4Q8N2S1 1624 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 A0A1W2PPW3 197 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 AKAP10O43572 662 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 HSPA1AP0DMV8 641 aaKnown RBP10.9□□□□□ -0.66
USP54-204ENST00000422491 HSPA1BP0DMV9 641 aaKnown RBP10.9□□□□□ -0.66
USP54-204ENST00000422491 MCF2P10911 925 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 UGT1A6P19224 532 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 TFEBP19484 476 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 UGT1A1P22309 533 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 UGT1A4P22310 534 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 SLC7A1P30825 629 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms