RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 LIMK2P53671 638 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 BCAT1P54687 386 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 STRA8Q7Z7C7 330 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 UNC93AQ86WB7 457 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 NT5DC4Q86YG4 428 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 LRRC52Q8N7C0 313 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 SLC26A7Q8TE54 656 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 ZFAND2BQ8WV99 257 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 SLC2A13Q96QE2 648 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 STN1Q9H668 368 aaKnown RBP10.08□□□□□ -0.8
SS18-203ENST00000415083 SMIM28A0A1B0GU29 152 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 MEIS3P2A8K0S8 358 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 H3BRB1 525 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 STX16-NPEPL1H3BU86 382 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 KIF3CO14782 793 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 CREB3O43889 395 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 OPHN1O60890 802 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 FKBP6O75344 327 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 RAG1P15918 1043 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 ZFXP17010 805 aaPredicted RBP10.08□□□□□ -0.8
SS18-203ENST00000415083 TPH1P17752 444 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 CYP2B6P20813 491 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 GP5P40197 560 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 BAG6P46379 1132 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 CDK7P50613 346 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 DEUP1Q05D60 604 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 ZNF460Q14592 562 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 DCAF6Q58WW2 860 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 XKR4Q5GH76 650 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 OGFRL1Q5TC84 451 aaPredicted RBP10.08□□□□□ -0.8
SS18-203ENST00000415083 ACAD11Q709F0 780 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 ARHGAP24Q8N264 748 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 ZMIZ2Q8NF64 920 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 EMID1Q96A84 441 aaPredicted RBP10.08□□□□□ -0.8
SS18-203ENST00000415083 GPR78Q96P69 363 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 SPATA16Q9BXB7 569 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 TUT1Q9H6E5 874 aaKnown RBP10.08□□□□□ -0.8
SS18-203ENST00000415083 CPSF2Q9P2I0 782 aaKnown RBP10.08□□□□□ -0.8
SS18-203ENST00000415083 ZDHHC2Q9UIJ5 367 aa10.08□□□□□ -0.8
SS18-203ENST00000415083 APOBEC2Q9Y235 224 aaKnown RBP10.08□□□□□ -0.8
SS18-203ENST00000415083 ARHGAP42A6NI28 874 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 SNUPNO95149 360 aaKnown RBP10.07□□□□□ -0.8
SS18-203ENST00000415083 C2P06681 752 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 HOXD8P13378 290 aaPredicted RBP10.07□□□□□ -0.8
SS18-203ENST00000415083 VCLP18206 1134 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 ARNTP27540 789 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 TYK2P29597 1187 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 GNL1P36915 607 aaPredicted RBP10.07□□□□□ -0.8
SS18-203ENST00000415083 ROR2Q01974 943 aaKnown RBP10.07□□□□□ -0.8
SS18-203ENST00000415083 TBL3Q12788 808 aaKnown RBP10.07□□□□□ -0.8
SS18-203ENST00000415083 ASPHQ12797 758 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 KCTD2Q14681 263 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 EML3Q32P44 896 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 ANKRD20A4Q4UJ75 823 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 HSP90AA5PQ58FG0 334 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 PAOXQ6QHF9 649 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 ARHGAP36Q6ZRI8 547 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 CLEC20AQ6ZU45 233 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 CENPLQ8N0S6 344 aaPredicted RBP10.07□□□□□ -0.8
SS18-203ENST00000415083 METTL25Q8N6Q8 603 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 MARK4Q96L34 752 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 OSMRQ99650 979 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 SIKE1Q9BRV8 207 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 GCOM2Q9BZD3 368 aaPredicted RBP10.07□□□□□ -0.8
SS18-203ENST00000415083 GDAP2Q9NXN4 497 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 MTF2Q9Y483 593 aaPredicted RBP10.07□□□□□ -0.8
SS18-203ENST00000415083 MRPL42Q9Y6G3 142 aaKnown RBP10.07□□□□□ -0.8
SS18-203ENST00000415083 CCDC78A2IDD5 438 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 YJEFN3A6XGL0 299 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 KPNA7A9QM74 516 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 TMEM233B4DJY2 109 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 DAB1O75553 588 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 KLHL2O95198 593 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 UQCRBP14927 111 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 NCF2P19878 526 aaPredicted RBP10.07□□□□□ -0.8
SS18-203ENST00000415083 CUL3Q13618 768 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 CEACAM7Q14002 265 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 GRM3Q14832 879 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 ZNF423Q2M1K9 1284 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 CNTD1Q8N815 330 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 PPP2R3CQ969Q6 453 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 ZNF669Q96BR6 464 aaPredicted RBP10.07□□□□□ -0.8
SS18-203ENST00000415083 CPNE1Q99829 537 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 PLEKHA5Q9HAU0 1116 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 OXSMQ9NWU1 459 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 UBP1Q9NZI7 540 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 DERAQ9Y315 318 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 NLRC5Q86WI3 1866 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 A0A096LPK6 155 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 CAPN8A6NHC0 703 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 MATN2O00339 956 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 CIB2O75838 187 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 AP2A1O95782 977 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 CAPNS1P04632 268 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 ERCC2P18074 760 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 XRCC1P18887 633 aaPredicted RBP10.07□□□□□ -0.8
SS18-203ENST00000415083 EPHA3P29320 983 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 THOP1P52888 689 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 RBBP5Q15291 538 aaKnown RBP10.07□□□□□ -0.8
SS18-203ENST00000415083 LSM12Q3MHD2 195 aaKnown RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms