RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 SPATA22Q8NHS9 363 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 DQX1Q8TE96 717 aaKnown RBP11.4□□□□□ -0.58
PTPRF-204ENST00000412568 EMID1Q96A84 441 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-204ENST00000412568 CCDC138Q96M89 665 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 NDNQ99608 321 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 DCDC2Q9UHG0 476 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 TPP1O14773 563 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 LRIG2O94898 1065 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 ATP6V1G2O95670 118 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 EDN1P05305 212 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 PYGLP06737 847 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 KCNJ2P63252 427 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 PURAQ00577 322 aaKnown RBP11.4□□□□□ -0.58
PTPRF-204ENST00000412568 ZNF697Q5TEC3 545 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 YTHDF3Q7Z739 585 aaKnown RBP11.4□□□□□ -0.58
PTPRF-204ENST00000412568 TRABD2AQ86V40 505 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 PRCCQ92733 491 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-204ENST00000412568 OMDQ99983 421 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 SEMA3CQ99985 751 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 MRPL9Q9BYD2 267 aaKnown RBP11.4□□□□□ -0.58
PTPRF-204ENST00000412568 TRIM54Q9BYV2 358 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 UPF3AQ9H1J1 476 aaKnown RBP11.4□□□□□ -0.58
PTPRF-204ENST00000412568 SYBUQ9NX95 663 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 ADAMTS5Q9UNA0 930 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 AURKCQ9UQB9 309 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 DERAQ9Y315 318 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 ZNF711Q9Y462 761 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 PTCH2Q9Y6C5 1203 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 PMM2O15305 246 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 GLP2RO95838 553 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 PGAM1P18669 254 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 GAD2Q05329 585 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 BTKQ06187 659 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 CAPRIN1Q14444 709 aaKnown RBP11.39□□□□□ -0.59
PTPRF-204ENST00000412568 CDCA2Q69YH5 1023 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-204ENST00000412568 PRSS55Q6UWB4 352 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-204ENST00000412568 DNAJC9Q8WXX5 260 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 APOPT1Q96IL0 206 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 CAB39LQ9H9S4 337 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 FBXO6Q9NRD1 293 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-204ENST00000412568 SLC17A7Q9P2U7 560 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 GTF2IRD1Q9UHL9 959 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 MYADML2A6NDP7 307 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 SRRM3A6NNA2 597 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-204ENST00000412568 CHADO15335 359 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 CNMDO75829 334 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 KLHL2O95198 593 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 TSPAN8P19075 237 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 TKTP29401 623 aaKnown RBP11.39□□□□□ -0.59
PTPRF-204ENST00000412568 DNAL1Q4LDG9 190 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 AGAP9Q5VTM2 703 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 NAIF1Q69YI7 327 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-204ENST00000412568 LRRC8DQ7L1W4 858 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 RNF148Q8N7C7 305 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 TMEM40Q8WWA1 233 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 PIK3R5Q8WYR1 880 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 SNX19Q92543 992 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 ZBTB18Q99592 522 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 TBL1YQ9BQ87 522 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 CORO1BQ9BR76 489 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 BPIFA1Q9NP55 256 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 ARHGEF4Q9NR80 690 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 TRHDEQ9UKU6 1024 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 HIST1H2AGP0C0S8 130 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-204ENST00000412568 HIST1H2ADP20671 130 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 CYP2C18P33260 490 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 SMAD3P84022 425 aaKnown RBP11.39□□□□□ -0.59
PTPRF-204ENST00000412568 RCN1Q15293 331 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 RBM23Q86U06 439 aaKnown RBP11.39□□□□□ -0.59
PTPRF-204ENST00000412568 FNIP1Q8TF40 1166 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 HIST1H2AHQ96KK5 128 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 EBNA1BP2Q99848 306 aaKnown RBP11.39□□□□□ -0.59
PTPRF-204ENST00000412568 HIST1H2AJQ99878 128 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 H2AFJQ9BTM1 129 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 XYLT2Q9H1B5 865 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 CASS4Q9NQ75 786 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 TRMT6Q9UJA5 497 aaKnown RBP11.39□□□□□ -0.59
PTPRF-204ENST00000412568 CNTRLQ7Z7A1 2325 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 CITO14578 2027 aa11.39□□□□□ -0.59
PTPRF-204ENST00000412568 HACD1B0YJ81 288 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 FCHO1O14526 889 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 DAB1O75553 588 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 DNAJC8O75937 253 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 RTN3O95197 1032 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 ESRRBO95718 433 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 HNRNPCP07910 306 aaKnown RBP eCLIP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 GRIA1P42261 906 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 CD151P48509 253 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 NAGLUP54802 743 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 DYNC1I2Q13409 638 aaKnown RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 NEPROQ6NW34 567 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 STRADAQ7RTN6 431 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 TAC4Q86UU9 113 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 SDCCAG3Q96C92 435 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 TLCD1Q96CP7 247 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 TUBGCP3Q96CW5 907 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 ACSS3Q9H6R3 686 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 EML4Q9HC35 981 aaKnown RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 NAV1Q8NEY1 1877 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 GUCA1CO95843 209 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 126.1 ms