RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 OSBPL2Q9H1P3 480 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 BCCIPQ9P287 314 aaKnown RBP eCLIP13.79□□□□□ -0.2
LIMS1-204ENST00000409441 OR12D3Q9UGF7 316 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 SNX10Q9Y5X0 201 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 HS3ST4Q9Y661 456 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 COL6A3P12111 3177 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 AGTP01019 485 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 SHBGP04278 402 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 ITGAVP06756 1048 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 ASGR2P07307 311 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 GDI1P31150 447 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 LSP1P33241 339 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 CHKAP35790 457 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 VCPP55072 806 aaKnown RBP13.79□□□□□ -0.2
LIMS1-204ENST00000409441 AUHQ13825 339 aaKnown RBP13.79□□□□□ -0.2
LIMS1-204ENST00000409441 FAM133BQ5BKY9 247 aaKnown RBP13.79□□□□□ -0.2
LIMS1-204ENST00000409441 PIK3R6Q5UE93 754 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 RAP1GAP2Q684P5 730 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 PSTKQ8IV42 348 aaKnown RBP13.79□□□□□ -0.2
LIMS1-204ENST00000409441 PYROXD2Q8N2H3 581 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 RAPGEF5Q92565 580 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 HSPH1Q92598 858 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 OTUB2Q96DC9 234 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 PRMT1Q99873 361 aaKnown RBP13.79□□□□□ -0.2
LIMS1-204ENST00000409441 DDX50Q9BQ39 737 aaKnown RBP13.79□□□□□ -0.2
LIMS1-204ENST00000409441 SNRNP25Q9BV90 132 aaKnown RBP13.79□□□□□ -0.2
LIMS1-204ENST00000409441 EPN3Q9H201 632 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 CDC42EP4Q9H3Q1 356 aaKnown RBP13.79□□□□□ -0.2
LIMS1-204ENST00000409441 DHX35Q9H5Z1 703 aaKnown RBP13.79□□□□□ -0.2
LIMS1-204ENST00000409441 GPATCH2LQ9NWQ4 482 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 AP4E1Q9UPM8 1137 aa13.79□□□□□ -0.2
LIMS1-204ENST00000409441 LRRD1A4D1F6 860 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 C3orf70A6NLC5 250 aaPredicted RBP13.78□□□□□ -0.2
LIMS1-204ENST00000409441 TRDMT1O14717 391 aaKnown RBP13.78□□□□□ -0.2
LIMS1-204ENST00000409441 KRT10P13645 584 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 TACR2P21452 398 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 SLC6A4P31645 630 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 HPDP32754 393 aaPredicted RBP13.78□□□□□ -0.2
LIMS1-204ENST00000409441 IFNAR2P48551 515 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 MAGOHP61326 146 aaKnown RBP13.78□□□□□ -0.2
LIMS1-204ENST00000409441 PDGFRLQ15198 375 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 CA9Q16790 459 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 ACBD5Q5T8D3 534 aaPredicted RBP13.78□□□□□ -0.2
LIMS1-204ENST00000409441 IZUMO3Q5VZ72 239 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 KAZNQ674X7 775 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 TRIM68Q6AZZ1 485 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 HIBCHQ6NVY1 386 aaPredicted RBP13.78□□□□□ -0.2
LIMS1-204ENST00000409441 RFWD3Q6PCD5 774 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 GSTA5Q7RTV2 222 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 C14orf80Q86SX3 495 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 CHSY1Q86X52 802 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 FAM217AQ8IXS0 508 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 ALLCQ8N6M5 410 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 BCAS4Q8TDM0 211 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 TEKT4Q8WW24 435 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 ASIC4Q96FT7 647 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 EBF3Q9H4W6 596 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 KLHL11Q9NVR0 708 aa13.78□□□□□ -0.2
LIMS1-204ENST00000409441 FAM72CH0Y354 149 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 DNALI1O14645 258 aaPredicted RBP13.77□□□□□ -0.21
LIMS1-204ENST00000409441 CHADO15335 359 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 RGS16O15492 202 aaPredicted RBP13.77□□□□□ -0.21
LIMS1-204ENST00000409441 TSPAN3O60637 253 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 KDELR1P24390 212 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 L1CAMP32004 1257 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 OASLQ15646 514 aaKnown RBP13.77□□□□□ -0.21
LIMS1-204ENST00000409441 EML3Q32P44 896 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 FAM72AQ5TYM5 149 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 FAM72DQ6L9T8 149 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 FBXL22Q6P050 247 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 TPGS1Q6ZTW0 290 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 BBS12Q6ZW61 710 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 CCDC25Q86WR0 208 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 FAM72BQ86X60 149 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 TMEM25Q86YD3 366 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 LGI2Q8N0V4 545 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 CPXM2Q8N436 756 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 KCTD6Q8NC69 237 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 IRF7Q92985 503 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 CENPTQ96BT3 561 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 TMA16Q96EY4 203 aaKnown RBP13.77□□□□□ -0.21
LIMS1-204ENST00000409441 BRD9Q9H8M2 597 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.77□□□□□ -0.21
LIMS1-204ENST00000409441 DNPEPQ9ULA0 475 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 VANGL2Q9ULK5 521 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 ZNF148Q9UQR1 794 aa13.77□□□□□ -0.21
LIMS1-204ENST00000409441 F5H5T6 163 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 RASGRF2O14827 1237 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 TCEA3O75764 348 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 TTC4O95801 387 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 ARSAP15289 507 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 GUCY1A3Q02108 690 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 NRG1Q02297 640 aaPredicted RBP13.76□□□□□ -0.21
LIMS1-204ENST00000409441 TNK2Q07912 1038 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 TRIP13Q15645 432 aaPredicted RBP13.76□□□□□ -0.21
LIMS1-204ENST00000409441 TNFAIP8L3Q5GJ75 292 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 PPP6R3Q5H9R7 873 aaPredicted RBP13.76□□□□□ -0.21
LIMS1-204ENST00000409441 LY6G5CQ5SRR4 150 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 CFAP52Q8N1V2 620 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 ZCCHC9Q8N567 271 aaKnown RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms